Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/ephemeris-0.10.5.dist-info/METADATA @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
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date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
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--- a/env/lib/python3.7/site-packages/ephemeris-0.10.5.dist-info/METADATA Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,338 +0,0 @@ -Metadata-Version: 2.1 -Name: ephemeris -Version: 0.10.5 -Summary: Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows. -Home-page: https://github.com/galaxyproject/ephemeris -Author: Galaxy Project and Community -Author-email: jmchilton@gmail.com -License: AFL -Keywords: galaxy -Platform: UNKNOWN -Classifier: Development Status :: 5 - Production/Stable -Classifier: Intended Audience :: Developers -Classifier: Environment :: Console -Classifier: License :: OSI Approved :: Academic Free License (AFL) -Classifier: Operating System :: POSIX -Classifier: Topic :: Software Development -Classifier: Topic :: Software Development :: Code Generators -Classifier: Topic :: Software Development :: Testing -Classifier: Natural Language :: English -Classifier: Programming Language :: Python :: 2 -Classifier: Programming Language :: Python :: 2.7 -Requires-Dist: six (>=1.9.0) -Requires-Dist: PyYAML -Requires-Dist: bioblend (>=0.10.0) -Requires-Dist: Jinja2 -Requires-Dist: galaxy-tool-util (>=19.9.0.dev5) -Requires-Dist: futures ; python_version < "3" - - -.. image:: https://readthedocs.org/projects/pip/badge/?version=latest - :target: https://ephemeris.readthedocs.org - -.. image:: https://badge.fury.io/py/ephemeris.svg - :target: https://pypi.python.org/pypi/ephemeris/ - -.. image:: https://travis-ci.org/galaxyproject/ephemeris.png?branch=master - :target: https://travis-ci.org/galaxyproject/ephemeris - -.. image:: https://api.codacy.com/project/badge/Coverage/e12102174b4e452c871cd2bafedaec60 - :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&utm_medium=referral&utm_content=galaxyproject/ephemeris&utm_campaign=Badge_Coverage - -.. image:: https://api.codacy.com/project/badge/Grade/e12102174b4e452c871cd2bafedaec60 - :target: https://www.codacy.com/app/galaxyproject/ephemeris?utm_source=github.com&utm_medium=referral&utm_content=galaxyproject/ephemeris&utm_campaign=Badge_Grade - -Ephemeris is a small Python library and set of scripts for managing the -bootstrapping of Galaxy_ plugins - tools, index data, and workflows. - -* Free software: Academic Free License version 3.0 -* Documentation: https://ephemeris.readthedocs.org. -* Code: https://github.com/galaxyproject/ephemeris - - -.. _Galaxy: http://galaxyproject.org/ -.. _GitHub: https://github.com/ -.. _Docker: https://www.docker.com/ -.. _Homebrew: http://brew.sh/ -.. _linuxbrew: https://github.com/Homebrew/linuxbrew -.. _Vagrant: https://www.vagrantup.com/ -.. _Travis CI: http://travis-ci.org/ - - - - -History -------- - -.. to_doc - ---------------------- -0.10.5 (2020-02-29) ---------------------- - -* Fix `shed-tools test -t workflow_tools.yml` (thanks to `@nsoranzo`_). `Pull - Request 155`_ -* Fix installing tool dependencies from yaml list (thanks to `@mvdbeek`_). - `Pull Request 154`_ -* Cast exceptions to string using unicodify (thanks to `@mvdbeek`_). `Pull - Request 150`_ -* Add description when creating folders with setup_data_libraries (thanks to - `@abretaud`_). `Pull Request 149`_ - ---------------------- -0.10.4 (2019-10-05) ---------------------- - -* When polling for repo install status, ensure the correct revision is being - checked (thanks to `@natefoo`_). `Pull Request 146`_ -* Add install_tool_deps command (thanks to `@innovate-invent`_). `Pull Request - 145`_ - ---------------------- -0.10.3 (2019-07-18) ---------------------- - -* Add install-tool-deps command that will install tool dependencies - (thanks to `@innovate-invent`_). `Pull Request 130`_ -* Require galaxy-tool-util instead of galaxy-lib (thanks to `@nsoranzo`_). - `Pull Request 143`_ -* Release to PyPI on tag (thanks to `@mvdbeek`_). `Pull Request 142`_ -* Make Data library creation more robust - (thanks to `@erasche`_). `Pull Request 138`_ -* Make tool testing more robust (thanks to - `@mvdbeek`_). `Pull Request 137`_, `Pull Request 136`_ - ---------------------- -0.10.2 (2019-06-04) ---------------------- - -* Fix default message check (thanks to `@mvdbeek`_). `Pull Request 135`_ - ---------------------- -0.10.1 (2019-06-04) ---------------------- - -* Fix timeout handling when installing repositories - (thanks to `@mvdbeek`_). `Pull Request 134`_ - ---------------------- -0.10.0 (2019-05-29) ---------------------- - -* fix doc building and regenerate (thanks to `@martenson`_). `Pull Request - 129`_ -* fix default for 'parallel_tests' typo (thanks to `@martenson`_). `Pull - Request 127`_ -* Include some additional stats for xunit reporting (thanks to `@mvdbeek`_). - `Pull Request 126`_ -* Handle timeout gracefully for UWSGI connection (thanks to `@pcm32`_). `Pull - Request 123`_ -* Update Docs for User Name (Should be Email) (thanks to `@rdvelazquez`_). - `Pull Request 122`_ -* remove the python invocation from usage examples (thanks to `@martenson`_). - `Pull Request 121`_ -* Fix crash when too_with_panel is empty (thanks to `@jvanbraekel`_). `Pull - Request 120`_ -* Test tools in parallel, with regular user permissions, without a shared - filesystem (thanks to `@mvdbeek`_). `Pull Request 118`_ -* use latest documentation dependencies to fix documentation build issue - (thanks to `@rhpvorderman`_). `Pull Request 114`_ -* Refactor shed tool functionality. Removed deprecated options from - shed-tools CLI. - shed-tools update now also accepts tool list, so tools in galaxy can - be selectively updated. Improved algorithm leads to much faster - skipping of already installed tools, which makes the installation - of tools much faster on an already populated galaxy. - (thanks to `@rhpvorderman`_). - `Pull Request 104`_ -* Add ``pytest``, enable coverage testing (thanks to `@rhpvorderman`_). - `Pull Request 105`_ -* Make ``setup_data_libraries.py`` check for existence before recreation of - libraries. - (thanks to `@Slugger70`_). - `Pull Request 103`_ -* Catch failures on requests to the installed repo list when doing post- - timeout spinning on installation in ``shed-tools`` (thanks to `@natefoo`_). - `Pull Request 97`_ -* Fix coverage reporting on codacy (thanks to `@rhpvorderman`_). - `Pull Request 106`_ -* Run-data-managers now outputs stderr of failed jobs (thanks to `@rhpvorderman`_). - `Pull Request 110`_ - ---------------------- -0.9.0 (2018-05-23) ---------------------- - -* Update data managers when updating tools (thanks to `@rhpvorderman`_). - `Pull Request 78`_, `Issue 69`_ -* Run data managers aggressive parallelization and refactoring (thanks to - `@rhpvorderman`_). - `Pull Request 79`_ -* Makes publishing of imported workflows available (thanks to `@pcm32`_). - `Pull Request 74`_ -* Add option to test tools on update/install for Galaxy 18.05 (thanks to `@jmchilton`_). - `Pull Request 81`_ -* Upload 2.0 support for data library creation (thanks to `@jmchilton`_). - `Pull Request 89`_ -* Fixes to revision parsing in tools.yaml (thanks to `@bgruening`_). - `Pull Request 70`_ -* Add Codacy monitoring and badge (thanks to `@jmchilton`_). - `Pull Request 73`_ -* Fix typo in project organization document (thanks to `@blankenberg`_). - `Pull Request 86`_ -* Fix hardcoded log paths (thanks to `@rhpvorderman`_). - `Pull Request 85`_ -* Fix ``shed-tools`` update argparse handling (thanks to `@rhpvorderman`_). - `Pull Request 88`_ -* Fix a few lint issues (thanks to `@jmchilton`_). - `Pull Request 90`_ - ---------------------- -0.8.0 (2017-12-29) ---------------------- - -* Many new documentation enhancements (thanks to @rhpvorderman, and others) -* rename of shed-install to shed-tools and add a new --latest and --revision argument (thanks to @rhpvorderman) -* many fixes and new tests by (thanks to @mvdbeek) -* Parallelization of run-data-managers (thanks to @rhpvorderman) -* run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman) -* run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman) -* ephemeris will now use https by default instead of http (thanks to @bgruening) - ---------------------- -0.7.0 (2017-06-27) ---------------------- - -* Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) - - docs are now published to https://readthedocs.org/projects/ephemeris/. -* Fix problem with empty list options related to running data managers (thanks to @rhpvorderman). -* Enable data managers to run with API keys (thanks to @rhpvorderman). -* Add sleep command to wait for a Galaxy API to become available (thanks to @erasche). -* Preserve readable order of keys while processing tool lists (thanks to @drosofff). - ---------------------- -0.6.1 (2017-04-17) ---------------------- - -* Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various - refactoring to reduce code duplication and Python 3 fixes. `#36 - <https://github.com/galaxyproject/ephemeris/pull/36>`__ - ---------------------- -0.6.0 (2017-04-10) ---------------------- - -* Add new connection options for setting up data libraries. - ---------------------- -0.5.1 (2017-04-07) ---------------------- - -* Fix new ``run-data-managers`` CLI entrypoint. - ---------------------- -0.5.0 (2017-04-06) ---------------------- - -* Add ``run-data-managers`` tool to trigger DM with multiple values and in order. `#30 <https://github.com/galaxyproject/ephemeris/pull/30>`_ -* The workflow install tool now supports a directory of workflows. `#27 <https://github.com/galaxyproject/ephemeris/pull/27>`_ -* enable global options in a tool yaml files, like `install_resolver_dependencies: true` `#26 <https://github.com/galaxyproject/ephemeris/pull/26>`_ -* Mention mimum required galaxy versions. `#23 <https://github.com/galaxyproject/ephemeris/pull/23>`_ (thanks to @mvdbeek) - - ---------------------- -0.4.0 (2016-09-07) ---------------------- - -* Be more generic in determining a server time-out (thanks to @afgane). -* Get tool list entrypoint and improvements (thanks to @mvdbeek). -* Rename ``tool_panel_section_name`` to ``tool_panel_section_label`` like - ansible-galaxy-tools (thanks to @nturaga). -* Add missing file ``tool_list.yaml.sample`` (thanks to @nturaga). - ---------------------- -0.3.0 (2016-08-26) ---------------------- - -* More robust shed-install script, install dependencies by default, improve logging - (thanks to @mvdbeek). - ---------------------- -0.2.0 (2016-08-15) ---------------------- - -* Add tool generate a tool list from a Galaxy workflow file - (thanks to @drosofff). -* Fix various code quality issues including adding beta support - for Python 3 (thanks in part to @mvdbeek). - ---------------------- -0.1.0 (2016-06-15) ---------------------- - -* Setup project, pull in scripts from `ansible-galaxy-tools - <https://github.com/galaxyproject/ansible-galaxy-tools>`__ - and adapt them for usage as a library. - -.. github_links -.. _Pull Request 155: https://github.com/galaxyproject/ephemeris/pull/155 -.. _Pull Request 154: https://github.com/galaxyproject/ephemeris/pull/154 -.. _Pull Request 150: https://github.com/galaxyproject/ephemeris/pull/150 -.. _Pull Request 149: https://github.com/galaxyproject/ephemeris/pull/149 -.. _Pull Request 146: https://github.com/galaxyproject/ephemeris/pull/146 -.. _Pull Request 145: https://github.com/galaxyproject/ephemeris/pull/145 -.. _Pull Request 130: https://github.com/galaxyproject/ephemeris/pull/130 -.. _Pull Request 143: https://github.com/galaxyproject/ephemeris/pull/143 -.. _Pull Request 142: https://github.com/galaxyproject/ephemeris/pull/142 -.. _Pull Request 138: https://github.com/galaxyproject/ephemeris/pull/138 -.. _Pull Request 137: https://github.com/galaxyproject/ephemeris/pull/137 -.. _Pull Request 136: https://github.com/galaxyproject/ephemeris/pull/136 -.. _Pull Request 135: https://github.com/galaxyproject/ephemeris/pull/135 -.. _Pull Request 134: https://github.com/galaxyproject/ephemeris/pull/134 -.. _Pull Request 129: https://github.com/galaxyproject/ephemeris/pull/129 -.. _Pull Request 127: https://github.com/galaxyproject/ephemeris/pull/127 -.. _Pull Request 126: https://github.com/galaxyproject/ephemeris/pull/126 -.. _Pull Request 123: https://github.com/galaxyproject/ephemeris/pull/123 -.. _Pull Request 122: https://github.com/galaxyproject/ephemeris/pull/122 -.. _Pull Request 121: https://github.com/galaxyproject/ephemeris/pull/121 -.. _Pull Request 120: https://github.com/galaxyproject/ephemeris/pull/120 -.. _Pull Request 118: https://github.com/galaxyproject/ephemeris/pull/118 -.. _Pull Request 114: https://github.com/galaxyproject/ephemeris/pull/114 -.. _Pull Request 97: https://github.com/galaxyproject/ephemeris/pull/97 -.. _Pull Request 103: https://github.com/galaxyproject/ephemeris/pull/103 -.. _Pull Request 104: https://github.com/galaxyproject/ephemeris/pull/104 -.. _Pull Request 105: https://github.com/galaxyproject/ephemeris/pull/105 -.. _Pull Request 106: https://github.com/galaxyproject/ephemeris/pull/106 -.. _Pull Request 110: https://github.com/galaxyproject/ephemeris/pull/110 -.. _Pull Request 74: https://github.com/galaxyproject/ephemeris/pull/74 -.. _Issue 69: https://github.com/galaxyproject/ephemeris/issues/69 -.. _Pull Request 73: https://github.com/galaxyproject/ephemeris/pull/73 -.. _Pull Request 78: https://github.com/galaxyproject/ephemeris/pull/78 -.. _Pull Request 70: https://github.com/galaxyproject/ephemeris/pull/70 -.. _Pull Request 86: https://github.com/galaxyproject/ephemeris/pull/86 -.. _Pull Request 79: https://github.com/galaxyproject/ephemeris/pull/79 -.. _Pull Request 85: https://github.com/galaxyproject/ephemeris/pull/85 -.. _Pull Request 81: https://github.com/galaxyproject/ephemeris/pull/81 -.. _Pull Request 90: https://github.com/galaxyproject/ephemeris/pull/90 -.. _Pull Request 89: https://github.com/galaxyproject/ephemeris/pull/89 -.. _Pull Request 88: https://github.com/galaxyproject/ephemeris/pull/88 -.. _@abretaud: https://github.com/abretaud -.. _@bgruening: https://github.com/bgruening -.. _@blankenberg: https://github.com/blankenberg -.. _@rhpvorderman: https://github.com/rhpvorderman -.. _@pcm32: https://github.com/pcm32 -.. _@jmchilton: https://github.com/jmchilton -.. _@Slugger70: https://github.com/Slugger70 -.. _@natefoo: https://github.com/natefoo -.. _@martenson: https://github.com/martenson -.. _@mvdbeek: https://github.com/mvdbeek -.. _@rdvelazquez: https://github.com/rdvelazquez -.. _@jvanbraekel: https://github.com/jvanbraekel -.. _@innovate-invent: https://github.com/innovate-invent -.. _@erasche: https://github.com/erasche -.. _@nsoranzo: https://github.com/nsoranzo - -.. _bioblend: https://github.com/galaxyproject/bioblend/ -.. _nose: https://nose.readthedocs.org/en/latest/ - -