--- a/env/lib/python3.7/site-packages/galaxy/util/script.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,89 +0,0 @@
-"""Utilities for Galaxy scripts
-"""
-import argparse
-import os
-import sys
-
-from galaxy.util.properties import find_config_file, load_app_properties
-
-DESCRIPTION = None
-ACTIONS = None
-ARGUMENTS = None
-DEFAULT_ACTION = None
-
-ARG_HELP_CONFIG_FILE = """
-Galaxy config file (defaults to $GALAXY_ROOT/config/galaxy.yml if that file exists
-or else to ./config/galaxy.ini if that exists). If this isn't set on the
-command line it can be set with the environment variable GALAXY_CONFIG_FILE.
-"""
-
-# ARG_HELP_CONFIG_SECTION = """
-# Section containing application configuration in the target config file specified with
-# -c/--config-file. This defaults to 'galaxy' for YAML/JSON configuration files and 'main'
-# with 'app:' prepended for INI. If this isn't set on the command line it can be set with
-# the environment variable GALAXY_CONFIG_SECTION.
-# """
-
-
-def main_factory(description=None, actions=None, arguments=None, default_action=None):
-    global DESCRIPTION, ACTIONS, ARGUMENTS, DEFAULT_ACTION
-    DESCRIPTION = description
-    ACTIONS = actions or {}
-    ARGUMENTS = arguments or []
-    DEFAULT_ACTION = default_action
-    return main
-
-
-def main(argv=None):
-    """Entry point for conversion process."""
-    if argv is None:
-        argv = sys.argv[1:]
-    args = _arg_parser().parse_args(argv)
-    kwargs = app_properties_from_args(args)
-    action = args.action
-    action_func = ACTIONS[action]
-    action_func(args, kwargs)
-
-
-def app_properties_from_args(args, legacy_config_override=None, app=None):
-    config_file = config_file_from_args(args, legacy_config_override=legacy_config_override, app=app)
-    config_section = getattr(args, "config_section", None)
-    app_properties = load_app_properties(config_file=config_file, config_section=config_section)
-    return app_properties
-
-
-def config_file_from_args(args, legacy_config_override=None, app=None):
-    app = app or getattr(args, "app", "galaxy")
-    config_file = legacy_config_override or args.config_file or find_config_file(app)
-    return config_file
-
-
-def populate_config_args(parser):
-    # config and config-file respected because we have used different arguments at different
-    # time for scripts.
-
-    # Options (e.g. option_name) not found in this file can have their defaults overridden
-    # set setting GALAXY_CONFIG_OPTION_NAME where OPTION_NAME is option_name converted to upper case.
-    # Options specified in that file can be overridden for this program set setting
-    # GALAXY_CONFIG_OVERRIDE_OPTION_NAME to a new value.
-    parser.add_argument("-c", "--config-file", "--config",
-                        default=os.environ.get('GALAXY_CONFIG_FILE', None),
-                        help=ARG_HELP_CONFIG_FILE)
-    parser.add_argument("--config-section",
-                        default=os.environ.get('GALAXY_CONFIG_SECTION', None),
-                        help=argparse.SUPPRESS)  # See ARG_HELP_CONFIG_SECTION comment above for unsuppressed details.
-
-
-def _arg_parser():
-    parser = argparse.ArgumentParser(description=DESCRIPTION)
-    parser.add_argument('action', metavar='ACTION', type=str,
-                        choices=list(ACTIONS.keys()),
-                        default=DEFAULT_ACTION,
-                        nargs='?' if DEFAULT_ACTION is not None else None,
-                        help='action to perform')
-    populate_config_args(parser)
-    parser.add_argument("--app",
-                        default=os.environ.get('GALAXY_APP', 'galaxy'))
-    for argument in ARGUMENTS:
-        parser.add_argument(*argument[0], **argument[1])
-    return parser