Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/networkx/readwrite/gpickle.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
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date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
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--- a/env/lib/python3.7/site-packages/networkx/readwrite/gpickle.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,107 +0,0 @@ -""" -************** -Pickled Graphs -************** -Read and write NetworkX graphs as Python pickles. - -"The pickle module implements a fundamental, but powerful algorithm -for serializing and de-serializing a Python object -structure. "Pickling" is the process whereby a Python object hierarchy -is converted into a byte stream, and "unpickling" is the inverse -operation, whereby a byte stream is converted back into an object -hierarchy." - -Note that NetworkX graphs can contain any hashable Python object as -node (not just integers and strings). For arbitrary data types it may -be difficult to represent the data as text. In that case using Python -pickles to store the graph data can be used. - -Format ------- -See https://docs.python.org/2/library/pickle.html -""" -__author__ = """Aric Hagberg (hagberg@lanl.gov)\nDan Schult (dschult@colgate.edu)""" -# Copyright (C) 2004-2019 by -# Aric Hagberg <hagberg@lanl.gov> -# Dan Schult <dschult@colgate.edu> -# Pieter Swart <swart@lanl.gov> -# All rights reserved. -# BSD license. - -__all__ = ['read_gpickle', 'write_gpickle'] - -import networkx as nx -from networkx.utils import open_file - -try: - import cPickle as pickle -except ImportError: - import pickle - - -@open_file(1, mode='wb') -def write_gpickle(G, path, protocol=pickle.HIGHEST_PROTOCOL): - """Write graph in Python pickle format. - - Pickles are a serialized byte stream of a Python object [1]_. - This format will preserve Python objects used as nodes or edges. - - Parameters - ---------- - G : graph - A NetworkX graph - - path : file or string - File or filename to write. - Filenames ending in .gz or .bz2 will be compressed. - - protocol : integer - Pickling protocol to use. Default value: ``pickle.HIGHEST_PROTOCOL``. - - Examples - -------- - >>> G = nx.path_graph(4) - >>> nx.write_gpickle(G, "test.gpickle") - - References - ---------- - .. [1] https://docs.python.org/2/library/pickle.html - """ - pickle.dump(G, path, protocol) - - -@open_file(0, mode='rb') -def read_gpickle(path): - """Read graph object in Python pickle format. - - Pickles are a serialized byte stream of a Python object [1]_. - This format will preserve Python objects used as nodes or edges. - - Parameters - ---------- - path : file or string - File or filename to write. - Filenames ending in .gz or .bz2 will be uncompressed. - - Returns - ------- - G : graph - A NetworkX graph - - Examples - -------- - >>> G = nx.path_graph(4) - >>> nx.write_gpickle(G, "test.gpickle") - >>> G = nx.read_gpickle("test.gpickle") - - References - ---------- - .. [1] https://docs.python.org/2/library/pickle.html - """ - return pickle.load(path) - - -# fixture for pytest -def teardown_module(module): - import os - os.unlink('test.gpickle')