Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/commands/cmd_brew.py @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
---|---|
date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
children |
line wrap: on
line diff
--- a/env/lib/python3.7/site-packages/planemo/commands/cmd_brew.py Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ -"""Module describing the planemo ``brew`` command.""" -import click -from galaxy.tool_util.deps import ( - brew_exts, - brew_util, -) -from galaxy.tool_util.deps.requirements import parse_requirements_from_xml -from galaxy.tool_util.loader_directory import load_tool_elements_from_path -from galaxy.util import bunch - -from planemo import options -from planemo.cli import command_function - - -@click.command('brew') -@options.optional_tools_arg() -@options.brew_option() -@command_function -def cli(ctx, path, brew=None): - """Install tool requirements using brew. - - An experimental approach to versioning brew recipes will be used. - See full discussion on the homebrew-science issues page here - - https://github.com/Homebrew/homebrew-science/issues/1191. Information - on the implementation can be found at - https://github.com/jmchilton/platform-brew - until a more permanent project home is setup. - """ - for (tool_path, tool_xml) in load_tool_elements_from_path(path): - ctx.log('Brewing requirements from tool %s', - click.format_filename(tool_path)) - mock_args = bunch.Bunch(brew=brew) - brew_context = brew_exts.BrewContext(mock_args) - requirements, containers = parse_requirements_from_xml(tool_xml) - - for recipe_context in brew_util.requirements_to_recipe_contexts( - requirements, - brew_context - ): - brew_exts.versioned_install(recipe_context)