diff env/lib/python3.7/site-packages/planemo/commands/cmd_clone.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
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--- a/env/lib/python3.7/site-packages/planemo/commands/cmd_clone.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,69 +0,0 @@
-"""Module describing the planemo ``recipe_init`` command."""
-import click
-
-from planemo import github_util
-from planemo import options
-from planemo.cli import command_function
-from planemo.config import planemo_option
-
-
-CLONE_GITHUB_TARGETS = {
-    "tools-iuc": "galaxyproject/tools-iuc",
-    "tools-devteam": "galaxyproject/tools-devteam",
-    "galaxy": "galaxyproject/galaxy",
-    "planemo": "galaxyproject/planemo",
-    "tools-galaxyp": "galaxyproteomics/tools-galaxyp",
-    "bioconda-recipes": "bioconda/bioconda-recipes",
-    "homebrew-science": "Homebrew/homebrew-science",
-    "workflows": "common-workflow-language/workflows",
-}
-
-
-def clone_target_arg():
-    """Represent target to clone/branch."""
-    return click.argument(
-        "target",
-        metavar="TARGET",
-        type=click.STRING,
-    )
-
-
-@click.command('clone')
-@planemo_option(
-    "--fork/--skip_fork",
-    default=True,
-    is_flag=True,
-)
-@planemo_option(
-    "--branch",
-    type=click.STRING,
-    default=None,
-    help="Create a named branch on result."
-)
-@clone_target_arg()
-@options.optional_project_arg(exists=None, default="__NONE__")
-@command_function
-def cli(ctx, target, path, **kwds):
-    """Short-cut to quickly clone, fork, and branch a relevant Github repo.
-
-    For instance, the following will clone, fork, and branch the tools-iuc
-    repository to allow a subsequent pull request to fix a problem with bwa.
-
-
-    \b
-        $ planemo clone --branch bwa-fix tools-iuc
-        $ cd tools-iuc
-        $ # Make changes.
-        $ git add -p # Add desired changes.
-        $ git commit -m "Fix bwa problem."
-        $ planemo pull_request -m "Fix bwa problem."
-
-    These changes do require that a github username and password are
-    specified in ~/.planemo.yml.
-    """
-    if target in CLONE_GITHUB_TARGETS:
-        target = "https://github.com/%s" % CLONE_GITHUB_TARGETS[target]
-    # Pretty hacky that this path isn't treated as None.
-    if path is None or path.endswith("__NONE__"):
-        path = target.split("/")[-1]
-    github_util.clone_fork_branch(ctx, target, path, **kwds)