diff env/lib/python3.7/site-packages/planemo/commands/cmd_lint.py @ 5:9b1c78e6ba9c draft default tip

"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author shellac
date Mon, 01 Jun 2020 08:59:25 -0400
parents 79f47841a781
children
line wrap: on
line diff
--- a/env/lib/python3.7/site-packages/planemo/commands/cmd_lint.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,68 +0,0 @@
-"""Module describing the planemo ``lint`` command."""
-import click
-
-from planemo import options
-from planemo.cli import command_function
-from planemo.lint import build_lint_args
-from planemo.tool_lint import lint_tools_on_path
-
-
-@click.command('lint')
-@options.optional_tools_arg(multiple=True, allow_uris=True)
-@options.report_level_option()
-@options.report_xunit()
-@options.fail_level_option()
-@options.skip_option()
-@options.lint_xsd_option()
-@options.recursive_option()
-@click.option(
-    "--urls",
-    is_flag=True,
-    default=False,
-    help="Check validity of URLs in XML files",
-)
-@click.option(
-    "--doi",
-    is_flag=True,
-    default=False,
-    help="Check validity of DOIs in XML files",
-)
-@click.option(
-    "--conda_requirements",
-    is_flag=True,
-    default=False,
-    help="Check tool requirements for availability in best practice Conda channels.",
-)
-@click.option(
-    "biocontainer",
-    "--biocontainer",
-    "--biocontainers",
-    is_flag=True,
-    default=False,
-    help="Check best practice BioContainer namespaces for a container definition applicable for this tool.",
-)
-# @click.option(
-# "--verify",
-# is_flag=True,
-# help="If an sha256sum is available, download the entire file AND validate it.",
-# default=False,
-# )
-@command_function
-def cli(ctx, uris, **kwds):
-    """Check for common errors and best practices."""
-    lint_args = build_lint_args(ctx, **kwds)
-    exit_code = lint_tools_on_path(
-        ctx,
-        uris,
-        lint_args,
-        recursive=kwds["recursive"]
-    )
-
-    # TODO: rearchitect XUnit.
-    # if kwds['urls']:
-    #         collected_data, url_exit_code = check_urls(ctx, paths, **kwds)
-    #         if kwds.get('report_xunit', False):
-    #             with open(kwds['report_xunit'], 'w') as handle:
-    #                 handle.write(build_report.template_data(
-    #                     collected_data, template_name='xunit.tpl'))
-    ctx.exit(exit_code)