--- a/env/lib/python3.7/site-packages/planemo/galaxy/profiles.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,169 +0,0 @@
-"""This modules describes the abstraction of a Galaxy profile.
-
-This is a workspace with a specific default configuration and shed
-tool setup. It is meant to be used with various serve commands.
-"""
-import json
-import os
-import shutil
-
-from galaxy.tool_util.deps.commands import which
-
-from planemo.config import (
-    OptionSource,
-)
-from planemo.database import create_database_source
-from .config import DATABASE_LOCATION_TEMPLATE
-
-PROFILE_OPTIONS_JSON_NAME = "planemo_profile_options.json"
-ALREADY_EXISTS_EXCEPTION = "Cannot create profile with name [%s], directory [%s] already exists."
-
-
-def profile_exists(ctx, profile_name, **kwds):
-    """Return a truthy value iff the specified profile already exists."""
-    profile_directory = _profile_directory(ctx, profile_name)
-    return os.path.exists(profile_directory)
-
-
-def list_profiles(ctx, **kwds):
-    """Return a list of current profile names."""
-    return os.listdir(ctx.galaxy_profiles_directory)
-
-
-def delete_profile(ctx, profile_name, **kwds):
-    """Delete profile with the specified name."""
-    profile_directory = _profile_directory(ctx, profile_name)
-    profile_options = _read_profile_options(profile_directory)
-    database_type = profile_options.get("database_type")
-    if database_type != "sqlite":
-        database_source = create_database_source(**kwds)
-        database_identifier = _profile_to_database_identifier(profile_name)
-        database_source.delete_database(
-            database_identifier,
-        )
-    shutil.rmtree(profile_directory)
-
-
-def create_profile(ctx, profile_name, **kwds):
-    """Create a profile with the specified name."""
-    engine_type = kwds.get("engine", "galaxy")
-    profile_directory = _profile_directory(ctx, profile_name)
-    if profile_exists(ctx, profile_name, **kwds):
-        message = ALREADY_EXISTS_EXCEPTION % (
-            profile_name, profile_directory
-        )
-        raise Exception(message)
-
-    os.makedirs(profile_directory)
-    create_for_engine = _create_profile_docker if engine_type == "docker_galaxy" else _create_profile_local
-    stored_profile_options = create_for_engine(ctx, profile_directory, profile_name, kwds)
-
-    profile_options_path = _stored_profile_options_path(profile_directory)
-    with open(profile_options_path, "w") as f:
-        json.dump(stored_profile_options, f)
-
-
-def _create_profile_docker(ctx, profile_directory, profile_name, kwds):
-    export_directory = os.path.join(profile_directory, "export")
-    os.makedirs(export_directory)
-    return {
-        "engine": "docker_galaxy",
-    }
-
-
-def _create_profile_local(ctx, profile_directory, profile_name, kwds):
-    database_type = kwds.get("database_type", "auto")
-    if database_type == "auto":
-        if which("psql"):
-            database_type = "postgres"
-        elif which("docker"):
-            database_type = "postgres_docker"
-        else:
-            database_type = "sqlite"
-
-    if database_type != "sqlite":
-        database_source = create_database_source(**kwds)
-        database_identifier = _profile_to_database_identifier(profile_name)
-        database_source.create_database(
-            database_identifier,
-        )
-        database_connection = database_source.sqlalchemy_url(database_identifier)
-    else:
-        database_location = os.path.join(profile_directory, "galaxy.sqlite")
-        database_connection = DATABASE_LOCATION_TEMPLATE % database_location
-
-    return {
-        "database_type": database_type,
-        "database_connection": database_connection,
-        "engine": "galaxy",
-    }
-
-
-def ensure_profile(ctx, profile_name, **kwds):
-    """Ensure a Galaxy profile exists and return profile defaults."""
-    if not profile_exists(ctx, profile_name, **kwds):
-        create_profile(ctx, profile_name, **kwds)
-
-    return _profile_options(ctx, profile_name, **kwds)
-
-
-def _profile_options(ctx, profile_name, **kwds):
-    profile_directory = _profile_directory(ctx, profile_name)
-    profile_options = _read_profile_options(profile_directory)
-    specified_engine_type = kwds.get("engine", "galaxy")
-    profile_engine_type = profile_options["engine"]
-    if specified_engine_type != profile_engine_type:
-        if ctx.get_option_source("engine") == OptionSource.cli:
-            raise Exception("Configured profile engine type [%s] does not match specified engine type [%s].")
-
-    if profile_engine_type == "docker_galaxy":
-        engine_options = dict(
-            export_directory=os.path.join(profile_directory, "export")
-        )
-    else:
-        file_path = os.path.join(profile_directory, "files")
-        shed_tool_path = os.path.join(profile_directory, "shed_tools")
-        shed_tool_conf = os.path.join(profile_directory, "shed_tool_conf.xml")
-        tool_dependency_dir = os.path.join(profile_directory, "deps")
-
-        engine_options = dict(
-            file_path=file_path,
-            tool_dependency_dir=tool_dependency_dir,
-            shed_tool_conf=shed_tool_conf,
-            shed_tool_path=shed_tool_path,
-            galaxy_brand=profile_name,
-        )
-    profile_options.update(engine_options)
-    profile_options["galaxy_brand"] = profile_name
-    return profile_options
-
-
-def _profile_to_database_identifier(profile_name):
-    char_lst = [c if c.isalnum() else "_" for c in profile_name]
-    return "plnmoprof_%s" % "".join(char_lst)
-
-
-def _read_profile_options(profile_directory):
-    profile_options_path = _stored_profile_options_path(profile_directory)
-    with open(profile_options_path, "r") as f:
-        profile_options = json.load(f)
-    return profile_options
-
-
-def _stored_profile_options_path(profile_directory):
-    profile_options_path = os.path.join(
-        profile_directory, PROFILE_OPTIONS_JSON_NAME
-    )
-    return profile_options_path
-
-
-def _profile_directory(ctx, profile_name):
-    return os.path.join(ctx.galaxy_profiles_directory, profile_name)
-
-
-__all__ = (
-    "create_profile",
-    "delete_profile",
-    "ensure_profile",
-    "list_profiles",
-)