Mercurial > repos > shellac > guppy_basecaller
diff env/lib/python3.7/site-packages/planemo/reports/custom.js @ 5:9b1c78e6ba9c draft default tip
"planemo upload commit 6c0a8142489327ece472c84e558c47da711a9142"
author | shellac |
---|---|
date | Mon, 01 Jun 2020 08:59:25 -0400 |
parents | 79f47841a781 |
children |
line wrap: on
line diff
--- a/env/lib/python3.7/site-packages/planemo/reports/custom.js Thu May 14 16:47:39 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,165 +0,0 @@ - -var renderTestResults = function(testData) { - var summary = testData["summary"]; - var numTests = summary["num_tests"]; - var numProblems = summary["num_errors"] + summary["num_failures"] + summary["num_skips"]; - var $overview = $("#overview-content"); - var $progress = $(".progress"); - if(numTests == 0) { - $overview.addClass("alert").addClass("alert-danger").text("No tests were executed."); - $progress.append($('<div class="progress-bar progress-bar-warning" role="progressbar" style="width: 100%" />')); - } else if(numProblems > 0) { - $overview.addClass("alert").addClass("alert-danger").text("There were problems with " + numProblems + " test(s) out of " + numTests + "."); - var problemPercent = (numProblems/(1.0 * numTests)) * 100.0; - var successPercent = 100.0 - problemPercent; - $progress.append($('<div class="progress-bar progress-bar-success" role="progressbar" style="width: ' + successPercent + '%" />')); - $progress.append($('<div class="progress-bar progress-bar-danger" role="progressbar" style="width: ' + problemPercent + '%" />')); - } else { - $overview.addClass("alert").addClass("alert-success").text("All " + numTests + " test(s) successfully executed."); - $progress.append($('<div class="progress-bar progress-bar-success" role="progressbar" style="width: 100%" />')); - } - - var $sidebar = $("#nav-sidebar-tests"); - for(var index in testData["tests"]) { - var test = testData["tests"][index]; - var testResult = new TestResult(index, test); - var rawId = testResult.rawId; - - var panelType = testResult.passed ? "panel-success panel-success-custom" : "panel-danger panel-danger-custom"; - var $panel = $('<div class="panel">'); - $panel.addClass(panelType); - - var $panelHeading = $('<div class="panel-heading">'); - var $panelTitle = $('<div class="panel-title">'); - var $a = $('<a class="collapsed" data-toggle="collapse">'); - $a.attr("id", rawId); - $a.attr("data-target", "#collapse" + index); - var testName = testResult.toolName + " (Test #" + (testResult.testIndex + 1) + (testResult.passed ? "" : ", Failed") + ")"; - $a.text(testName); - var $navLink = $('<a>').attr('href', '#' + rawId).text(testName) - if(!testResult.passed) { - $navLink.addClass("text-danger text-danger-custom"); - } else { - $navLink.addClass("text-success text-success-custom"); - } - $sidebar.append($('<li>').append( $navLink ) ); - $panelTitle.append($a) - $panelHeading.append($panelTitle); - - var $panelBody = $('<div class="panel-body panel-collapse collapse" >'); - $panelBody.attr("id", "collapse" + index); - - var $status = $('<div>').text("status: " + testResult.status); - $panelBody.append($status); - if(testResult.problems.length > 0) { - var $problemsLabel = $('<div>').text("problems: "); - var $problemsDiv = $('<div style="margin-left:10px;">'); - var $problemsUl = $('<ul>'); - for(var problemIndex in testResult.problems) { - $problemsUl.append($('<li>').append($('<pre>').text(testResult.problems[problemIndex]))); - } - $problemsDiv.append($problemsUl); - $panelBody.append($problemsLabel).append($problemsDiv); - } - var $commandLabel = $('<div>command:</div>'); - var $stdoutLabel = $('<div>job standard output:</div>'); - var $stderrLabel = $('<div>job standard error:</div>'); - var $command; - if(testResult.command !== null) { - $command = $('<pre class="pre-scrollable" style="margin-left:10px;">').text(testResult.command); - } else { - $command = $('<div class="alert alert-warning" style="margin-left:10px;">').text("No command recorded."); - } - var $stdout; - if(testResult.stdout !== null) { - $stdout = $('<pre class="pre-scrollable" style="margin-left:10px;">').text(testResult.stdout); - } else { - $stdout = $('<div class="alert alert-warning" style="margin-left:10px;">').text("No standard output recorded."); - } - var $stderr; - if(testResult.stderr !== null) { - $stderr = $('<pre class="pre-scrollable" style="margin-left:10px;">').text(testResult.stderr); - } else { - $stderr = $('<div class="alert alert-warning" style="margin-left:10px;">').text("No standard error recorded."); - } - $panelBody - .append($commandLabel) - .append($command) - .append($stdoutLabel) - .append($stdout) - .append($stderrLabel) - .append($stderr); - if(!testResult.passed) { - var $logLabel = $('<div>log:</div>'); - var $log = $('<pre class="pre-scrollable" style="margin-left: 10px;">').text(testResult.problemLog); - $panelBody.append($logLabel).append($log); - } - - $panel.append($panelHeading).append($panelBody); - $(".main").append($panel); - } -} - -var TestResult = function(index, data) { - this.rawId = data["id"]; - - var idParts = this.rawId.split("TestForTool_"); - var testMethod = idParts[idParts.length-1]; - var splitParts; - if(testMethod.indexOf(".test_tool_") > -1) { - splitParts = testMethod.split(".test_tool_"); - } else { - splitParts = rSplit(testMethod, "-", 1); - } - var toolName = splitParts[0]; - var testIndex; - if(data["data"]["test_index"] !== null) { - testIndex = data["data"]["test_index"]; - } else { - testIndex = splitParts[1]; - } - this.toolName = toolName; - this.testIndex = parseInt(testIndex === undefined ? index : testIndex); - this.status = data["data"]["status"]; - var job = data["data"]["job"]; - if(job) { - this.stdout = data["data"]["job"]["stdout"]; - this.stderr = data["data"]["job"]["stderr"]; - this.command = data["data"]["job"]["command_line"]; - } else { - this.stdout = null; - this.stderr = null; - this.command = null; - } - this.problems = []; - var outputProblems = data["data"]["output_problems"] || []; - var executionProblem = data["data"]["execution_problem"]; - this.problems.push.apply(this.problems, outputProblems); - if(executionProblem) { - this.problems.push(executionProblem); - } - this.problemLog = data["data"]["problem_log"]; - this.passed = (this.status == "success"); -} - -// http://stackoverflow.com/questions/5202085/javascript-equivalent-of-pythons-rsplit -function rSplit(str, sep, maxsplit) { - var split = str.split(sep); - return maxsplit ? [ split.slice(0, -maxsplit).join(sep) ].concat(split.slice(-maxsplit)) : split; -} - - -// http://stackoverflow.com/questions/19491336/get-url-parameter-jquery -function getUrlParameter(sParam) -{ - var sPageURL = window.location.search.substring(1); - var sURLVariables = sPageURL.split('&'); - for (var i = 0; i < sURLVariables.length; i++) - { - var sParameterName = sURLVariables[i].split('='); - if (sParameterName[0] == sParam) - { - return sParameterName[1]; - } - } -}