--- a/env/lib/python3.7/site-packages/planemo/tools.py	Thu May 14 16:47:39 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,92 +0,0 @@
-"""Planemo-specific wrappers around galaxy-tool-util tool functionality."""
-from __future__ import absolute_import
-
-import os
-import sys
-import traceback
-
-from galaxy.tool_util import loader_directory
-from galaxy.tool_util.fetcher import ToolLocationFetcher
-
-from planemo.io import error, info
-
-is_tool_load_error = loader_directory.is_tool_load_error
-SKIP_XML_MESSAGE = "Skipping XML file - does not appear to be a tool %s."
-SHED_FILES = ["tool_dependencies.xml", "repository_dependencies.xml"]
-LOAD_ERROR_MESSAGE = "Error loading tool with path %s"
-
-
-def uri_to_path(ctx, uri):
-    fetcher = ToolLocationFetcher()
-    return fetcher.to_tool_path(uri)
-
-
-def uris_to_paths(ctx, uris):
-    fetcher = ToolLocationFetcher()
-    paths = []
-    for uri in uris:
-        path = fetcher.to_tool_path(uri)
-        paths.append(path)
-    return paths
-
-
-def yield_tool_sources_on_paths(ctx, paths, recursive=False, yield_load_errors=True, exclude_deprecated=False):
-    for path in paths:
-        for (tool_path, tool_source) in yield_tool_sources(ctx, path, recursive, yield_load_errors):
-            if exclude_deprecated and 'deprecated' in tool_path:
-                continue
-            yield (tool_path, tool_source)
-
-
-def yield_tool_sources(ctx, path, recursive=False, yield_load_errors=True):
-    tools = load_tool_sources_from_path(
-        path,
-        recursive,
-        register_load_errors=True,
-    )
-    for (tool_path, tool_source) in tools:
-        if is_tool_load_error(tool_source):
-            if yield_load_errors:
-                yield (tool_path, tool_source)
-            else:
-                error(LOAD_ERROR_MESSAGE % tool_path)
-            continue
-
-        if not _is_tool_source(ctx, tool_path, tool_source):
-            continue
-        yield (tool_path, tool_source)
-
-
-def load_tool_sources_from_path(path, recursive, register_load_errors=False):
-    """Generator for tool sources on a path."""
-    return loader_directory.load_tool_sources_from_path(
-        path,
-        _load_exception_handler,
-        recursive=recursive,
-        register_load_errors=register_load_errors,
-    )
-
-
-def _load_exception_handler(path, exc_info):
-    error(LOAD_ERROR_MESSAGE % path)
-    traceback.print_exception(*exc_info, limit=1, file=sys.stderr)
-
-
-def _is_tool_source(ctx, tool_path, tool_source):
-    if os.path.basename(tool_path) in SHED_FILES:
-        return False
-    root = getattr(tool_source, "root", None)
-    if root is not None:
-        if root.tag != "tool":
-            if ctx.verbose:
-                info(SKIP_XML_MESSAGE % tool_path)
-            return False
-    return True
-
-
-__all__ = (
-    "is_tool_load_error",
-    "load_tool_sources_from_path",
-    "yield_tool_sources",
-    "yield_tool_sources_on_paths",
-)