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view env/bin/dynamodb_dump @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 import argparse import errno import os import boto from boto.compat import json from boto.compat import six DESCRIPTION = """Dump the contents of one or more DynamoDB tables to the local filesystem. Each table is dumped into two files: - {table_name}.metadata stores the table's name, schema and provisioned throughput. - {table_name}.data stores the table's actual contents. Both files are created in the current directory. To write them somewhere else, use the --out-dir parameter (the target directory will be created if needed). """ def dump_table(table, out_dir): metadata_file = os.path.join(out_dir, "%s.metadata" % table.name) data_file = os.path.join(out_dir, "%s.data" % table.name) with open(metadata_file, "w") as metadata_fd: json.dump( { "name": table.name, "schema": table.schema.dict, "read_units": table.read_units, "write_units": table.write_units, }, metadata_fd ) with open(data_file, "w") as data_fd: for item in table.scan(): # JSON can't serialize sets -- convert those to lists. data = {} for k, v in six.iteritems(item): if isinstance(v, (set, frozenset)): data[k] = list(v) else: data[k] = v data_fd.write(json.dumps(data)) data_fd.write("\n") def dynamodb_dump(tables, out_dir): try: os.makedirs(out_dir) except OSError as e: # We don't care if the dir already exists. if e.errno != errno.EEXIST: raise conn = boto.connect_dynamodb() for t in tables: dump_table(conn.get_table(t), out_dir) if __name__ == "__main__": parser = argparse.ArgumentParser( prog="dynamodb_dump", description=DESCRIPTION ) parser.add_argument("--out-dir", default=".") parser.add_argument("tables", metavar="TABLES", nargs="+") namespace = parser.parse_args() dynamodb_dump(namespace.tables, namespace.out_dir)