Mercurial > repos > shellac > guppy_basecaller
view env/bin/taskadmin @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 # Copyright (c) 2009 Chris Moyer http://coredumped.org/ # # Permission is hereby granted, free of charge, to any person obtaining a # copy of this software and associated documentation files (the # "Software"), to deal in the Software without restriction, including # without limitation the rights to use, copy, modify, merge, publish, dis- # tribute, sublicense, and/or sell copies of the Software, and to permit # persons to whom the Software is furnished to do so, subject to the fol- # lowing conditions: # # The above copyright notice and this permission notice shall be included # in all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS # # Task/Job Administration utility # VERSION="0.1" __version__ = VERSION usage = """%prog [options] [command] Commands: list|ls List all Tasks in SDB delete <id> Delete Task with id <id> get <name> Get Task <name> create|mk <name> <hour> <command> Create a new Task <name> with command <command> running every <hour> """ def list(): """List all Tasks in SDB""" from boto.manage.task import Task print "%-8s %-40s %s" % ("Hour", "Name", "Command") print "-"*100 for t in Task.all(): print "%-8s %-40s %s" % (t.hour, t.name, t.command) def get(name): """Get a task :param name: The name of the task to fetch :type name: str """ from boto.manage.task import Task q = Task.find() q.filter("name like", "%s%%" % name) for t in q: print "="*80 print "| ", t.id print "|%s" % ("-"*79) print "| Name: ", t.name print "| Hour: ", t.hour print "| Command: ", t.command if t.last_executed: print "| Last Run: ", t.last_executed.ctime() print "| Last Status: ", t.last_status print "| Last Run Log: ", t.last_output print "="*80 def delete(id): from boto.manage.task import Task t = Task.get_by_id(id) print "Deleting task: %s" % t.name if raw_input("Are you sure? ").lower() in ["y", "yes"]: t.delete() print "Deleted" else: print "Canceled" def create(name, hour, command): """Create a new task :param name: Name of the task to create :type name: str :param hour: What hour to run it at, "*" for every hour :type hour: str :param command: The command to execute :type command: str """ from boto.manage.task import Task t = Task() t.name = name t.hour = hour t.command = command t.put() print "Created task: %s" % t.id if __name__ == "__main__": try: import readline except ImportError: pass import boto import sys from optparse import OptionParser from boto.mashups.iobject import IObject parser = OptionParser(version=__version__, usage=usage) (options, args) = parser.parse_args() if len(args) < 1: parser.print_help() sys.exit(1) command = args[0].lower() if command in ("ls", "list"): list() elif command == "get": get(args[1]) elif command == "create": create(args[1], args[2], args[3]) elif command == "delete": delete(args[1])