Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/cwltool/tests/test_pathmapper.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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import pytest from cwltool.pathmapper import PathMapper, normalizeFilesDirs def test_subclass(): class SubPathMapper(PathMapper): def __init__(self, referenced_files, basedir, stagedir, new): super(SubPathMapper, self).__init__(referenced_files, basedir, stagedir) self.new = new pathmap = SubPathMapper([], '', '', 'new') assert pathmap.new is not None, 'new' normalization_parameters = [ ('strip trailing slashes', {'class': 'Directory', 'location': '/foo/bar/' }, {'class': 'Directory', 'location': '/foo/bar', 'basename': 'bar' } ), ('file', {'class': 'File', 'location': 'file1.txt' }, {'class': 'File', 'location': 'file1.txt', 'basename': 'file1.txt', 'nameext': '.txt', 'nameroot': 'file1' } ), ('file with local uri', {'class': 'File', 'location': 'file:///foo/file1.txt' }, {'class': 'File', 'location': 'file:///foo/file1.txt', 'basename': 'file1.txt', 'nameext': '.txt', 'nameroot': 'file1' } ), ('file with http url', {'class': 'File', 'location': 'http://example.com/file1.txt' }, {'class': 'File', 'location': 'http://example.com/file1.txt', 'basename': 'file1.txt', 'nameext': '.txt', 'nameroot': 'file1' } ) ] @pytest.mark.parametrize('name,file_dir,expected', normalization_parameters) def test_normalizeFilesDirs(name, file_dir, expected): normalizeFilesDirs(file_dir) assert file_dir == expected, name # (filename, expected: (nameroot, nameext)) basename_generation_parameters = [ ('foo.bar', ('foo', '.bar')), ('foo', ('foo', '')), ('.foo', ('.foo', '')), ('foo.', ('foo', '.')), ('foo.bar.baz', ('foo.bar', '.baz')) ] @pytest.mark.parametrize('filename,expected', basename_generation_parameters) def test_basename_field_generation(filename, expected): nameroot, nameext = expected expected = { 'class': 'File', 'location': '/foo/' + filename, 'basename': filename, 'nameroot': nameroot, 'nameext': nameext } file = { 'class': 'File', 'location': '/foo/' + filename } normalizeFilesDirs(file) assert file == expected