Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/ephemeris/common_parser.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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#!/usr/bin/env python import argparse def get_common_args(login_required=True, log_file=False): parser = argparse.ArgumentParser(add_help=False) general_group = parser.add_argument_group('General options') general_group.add_argument("-v", "--verbose", help="Increase output verbosity.", action="store_true") if log_file: general_group.add_argument("--log_file", dest="log_file", help="Where the log file should be stored. " "Default is a file in your system's temp folder", default=None) con_group = parser.add_argument_group('Galaxy connection') con_group.add_argument("-g", "--galaxy", help="Target Galaxy instance URL/IP address", default="http://localhost:8080") if login_required: con_group.add_argument("-u", "--user", help="Galaxy user email address") con_group.add_argument("-p", "--password", help="Password for the Galaxy user") con_group.add_argument("-a", "--api_key", dest="api_key", help="Galaxy admin user API key (required if not defined in the tools list file)") return parser