Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/planemo/database/factory.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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"""Create a DatabaseSource from supplied planemo configuration.""" from galaxy.tool_util.deps.commands import which from .postgres import LocalPostgresDatabaseSource from .postgres_docker import DockerPostgresDatabaseSource def create_database_source(**kwds): """Return a :class:`planemo.database.DatabaseSource` for configuration.""" database_type = kwds.get("database_type", "auto") if database_type == "auto": if which("psql"): database_type = "postgres" elif which("docker"): database_type = "postgres_docker" else: raise Exception("Cannot find executables for psql or docker, cannot configure a database source.") if database_type == "postgres": return LocalPostgresDatabaseSource(**kwds) elif database_type == "postgres_docker": return DockerPostgresDatabaseSource(**kwds) # TODO # from .sqlite import SqliteDatabaseSource # elif database_type == "sqlite": # return SqliteDatabaseSource(**kwds) else: raise Exception("Unknown database type [%s]." % database_type) __all__ = ( "create_database_source", )