Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/rdflib/namespace.py @ 0:26e78fe6e8c4 draft
"planemo upload commit c699937486c35866861690329de38ec1a5d9f783"
author | shellac |
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date | Sat, 02 May 2020 07:14:21 -0400 |
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from rdflib.py3compat import format_doctest_out __doc__ = format_doctest_out(""" =================== Namespace Utilities =================== RDFLib provides mechanisms for managing Namespaces. In particular, there is a :class:`~rdflib.namespace.Namespace` class that takes as its argument the base URI of the namespace. .. code-block:: pycon >>> from rdflib.namespace import Namespace >>> owl = Namespace('http://www.w3.org/2002/07/owl#') Fully qualified URIs in the namespace can be constructed either by attribute or by dictionary access on Namespace instances: .. code-block:: pycon >>> owl.seeAlso rdflib.term.URIRef(%(u)s'http://www.w3.org/2002/07/owl#seeAlso') >>> owl['seeAlso'] rdflib.term.URIRef(%(u)s'http://www.w3.org/2002/07/owl#seeAlso') Automatic handling of unknown predicates ----------------------------------------- As a programming convenience, a namespace binding is automatically created when :class:`rdflib.term.URIRef` predicates are added to the graph. Importable namespaces ----------------------- The following namespaces are available by directly importing from rdflib: * RDF * RDFS * OWL * XSD * FOAF * SKOS * DOAP * DC * DCTERMS * VOID .. code-block:: pycon >>> from rdflib import OWL >>> OWL.seeAlso rdflib.term.URIRef(%(u)s'http://www.w3.org/2002/07/owl#seeAlso') """) import logging logger = logging.getLogger(__name__) import os from urllib.parse import urljoin, urldefrag from urllib.request import pathname2url from rdflib.term import URIRef, Variable, _XSD_PFX, _is_valid_uri __all__ = [ 'is_ncname', 'split_uri', 'Namespace', 'ClosedNamespace', 'NamespaceManager', 'XMLNS', 'RDF', 'RDFS', 'XSD', 'OWL', 'SKOS', 'DOAP', 'FOAF', 'DC', 'DCTERMS', 'VOID'] class Namespace(str): __doc__ = format_doctest_out(""" Utility class for quickly generating URIRefs with a common prefix >>> from rdflib import Namespace >>> n = Namespace("http://example.org/") >>> n.Person # as attribute rdflib.term.URIRef(%(u)s'http://example.org/Person') >>> n['first-name'] # as item - for things that are not valid python identifiers rdflib.term.URIRef(%(u)s'http://example.org/first-name') """) def __new__(cls, value): try: rt = str.__new__(cls, value) except UnicodeDecodeError: rt = str.__new__(cls, value, 'utf-8') return rt @property def title(self): return URIRef(self + 'title') def term(self, name): # need to handle slices explicitly because of __getitem__ override return URIRef(self + (name if isinstance(name, str) else '')) def __getitem__(self, key, default=None): return self.term(key) def __getattr__(self, name): if name.startswith("__"): # ignore any special Python names! raise AttributeError else: return self.term(name) def __repr__(self): return "Namespace(%s)"%str.__repr__(self) class URIPattern(str): __doc__ = format_doctest_out(""" Utility class for creating URIs according to some pattern This supports either new style formatting with .format or old-style with %% operator >>> u=URIPattern("http://example.org/%%s/%%d/resource") >>> u%%('books', 12345) rdflib.term.URIRef(%(u)s'http://example.org/books/12345/resource') """) def __new__(cls, value): try: rt = str.__new__(cls, value) except UnicodeDecodeError: rt = str.__new__(cls, value, 'utf-8') return rt def __mod__(self, *args, **kwargs): return URIRef(str(self).__mod__(*args, **kwargs)) def format(self, *args, **kwargs): return URIRef(str.format(self, *args, **kwargs)) def __repr__(self): return "URIPattern(%r)"%str.__repr__(self) class ClosedNamespace(object): """ A namespace with a closed list of members Trying to create terms not listen is an error """ def __init__(self, uri, terms): self.uri = uri self.__uris = {} for t in terms: self.__uris[t] = URIRef(self.uri + t) def term(self, name): uri = self.__uris.get(name) if uri is None: raise Exception( "term '%s' not in namespace '%s'" % (name, self.uri)) else: return uri def __getitem__(self, key, default=None): return self.term(key) def __getattr__(self, name): if name.startswith("__"): # ignore any special Python names! raise AttributeError else: return self.term(name) def __str__(self): return str(self.uri) def __repr__(self): return """rdf.namespace.ClosedNamespace('%s')""" % str(self.uri) class _RDFNamespace(ClosedNamespace): """ Closed namespace for RDF terms """ def __init__(self): super(_RDFNamespace, self).__init__( URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#"), terms=[ # Syntax Names "RDF", "Description", "ID", "about", "parseType", "resource", "li", "nodeID", "datatype", # RDF Classes "Seq", "Bag", "Alt", "Statement", "Property", "List", "PlainLiteral", # RDF Properties "subject", "predicate", "object", "type", "value", "first", "rest", # and _n where n is a non-negative integer # RDF Resources "nil", # Added in RDF 1.1 "XMLLiteral", "HTML", "langString"] ) def term(self, name): try: i = int(name) return URIRef("%s_%s" % (self.uri, i)) except ValueError: return super(_RDFNamespace, self).term(name) RDF = _RDFNamespace() RDFS = ClosedNamespace( uri=URIRef("http://www.w3.org/2000/01/rdf-schema#"), terms=[ "Resource", "Class", "subClassOf", "subPropertyOf", "comment", "label", "domain", "range", "seeAlso", "isDefinedBy", "Literal", "Container", "ContainerMembershipProperty", "member", "Datatype"] ) OWL = Namespace('http://www.w3.org/2002/07/owl#') XSD = Namespace(_XSD_PFX) SKOS = Namespace('http://www.w3.org/2004/02/skos/core#') DOAP = Namespace('http://usefulinc.com/ns/doap#') FOAF = Namespace('http://xmlns.com/foaf/0.1/') DC = Namespace('http://purl.org/dc/elements/1.1/') DCTERMS = Namespace('http://purl.org/dc/terms/') VOID = Namespace('http://rdfs.org/ns/void#') class NamespaceManager(object): """ Class for managing prefix => namespace mappings Sample usage from FuXi ... .. code-block:: python ruleStore = N3RuleStore(additionalBuiltins=additionalBuiltins) nsMgr = NamespaceManager(Graph(ruleStore)) ruleGraph = Graph(ruleStore,namespace_manager=nsMgr) and ... .. code-block:: pycon >>> import rdflib >>> from rdflib import Graph >>> from rdflib.namespace import Namespace, NamespaceManager >>> exNs = Namespace('http://example.com/') >>> namespace_manager = NamespaceManager(Graph()) >>> namespace_manager.bind('ex', exNs, override=False) >>> g = Graph() >>> g.namespace_manager = namespace_manager >>> all_ns = [n for n in g.namespace_manager.namespaces()] >>> assert ('ex', rdflib.term.URIRef('http://example.com/')) in all_ns >>> """ def __init__(self, graph): self.graph = graph self.__cache = {} self.__log = None self.bind("xml", "http://www.w3.org/XML/1998/namespace") self.bind("rdf", RDF) self.bind("rdfs", RDFS) self.bind("xsd", XSD) def reset(self): self.__cache = {} def __get_store(self): return self.graph.store store = property(__get_store) def qname(self, uri): prefix, namespace, name = self.compute_qname(uri) if prefix == "": return name else: return ":".join((prefix, name)) def normalizeUri(self, rdfTerm): """ Takes an RDF Term and 'normalizes' it into a QName (using the registered prefix) or (unlike compute_qname) the Notation 3 form for URIs: <...URI...> """ try: namespace, name = split_uri(rdfTerm) namespace = URIRef(str(namespace)) except: if isinstance(rdfTerm, Variable): return "?%s" % rdfTerm else: return "<%s>" % rdfTerm prefix = self.store.prefix(namespace) if prefix is None and isinstance(rdfTerm, Variable): return "?%s" % rdfTerm elif prefix is None: return "<%s>" % rdfTerm else: qNameParts = self.compute_qname(rdfTerm) return ':'.join([qNameParts[0], qNameParts[-1]]) def compute_qname(self, uri, generate=True): if not _is_valid_uri(uri): raise Exception('"%s" does not look like a valid URI, I cannot serialize this. Perhaps you wanted to urlencode it?'%uri) if not uri in self.__cache: namespace, name = split_uri(uri) namespace = URIRef(namespace) prefix = self.store.prefix(namespace) if prefix is None: if not generate: raise Exception( "No known prefix for %s and generate=False") num = 1 while 1: prefix = "ns%s" % num if not self.store.namespace(prefix): break num += 1 self.bind(prefix, namespace) self.__cache[uri] = (prefix, namespace, name) return self.__cache[uri] def bind(self, prefix, namespace, override=True, replace=False): """bind a given namespace to the prefix if override, rebind, even if the given namespace is already bound to another prefix. if replace, replace any existing prefix with the new namespace """ namespace = URIRef(str(namespace)) # When documenting explain that override only applies in what cases if prefix is None: prefix = '' bound_namespace = self.store.namespace(prefix) # Check if the bound_namespace contains a URI # and if so convert it into a URIRef for comparison # This is to prevent duplicate namespaces with the # same URI if bound_namespace: bound_namespace = URIRef(bound_namespace) if bound_namespace and bound_namespace != namespace: if replace: self.store.bind(prefix, namespace) return # prefix already in use for different namespace # # append number to end of prefix until we find one # that's not in use. if not prefix: prefix = "default" num = 1 while 1: new_prefix = "%s%s" % (prefix, num) tnamespace = self.store.namespace(new_prefix) if tnamespace and namespace == URIRef(tnamespace): # the prefix is already bound to the correct # namespace return if not self.store.namespace(new_prefix): break num += 1 self.store.bind(new_prefix, namespace) else: bound_prefix = self.store.prefix(namespace) if bound_prefix is None: self.store.bind(prefix, namespace) elif bound_prefix == prefix: pass # already bound else: if override or bound_prefix.startswith("_"): # or a generated # prefix self.store.bind(prefix, namespace) def namespaces(self): for prefix, namespace in self.store.namespaces(): namespace = URIRef(namespace) yield prefix, namespace def absolutize(self, uri, defrag=1): base = urljoin("file:", pathname2url(os.getcwd())) result = urljoin("%s/" % base, uri, allow_fragments=not defrag) if defrag: result = urldefrag(result)[0] if not defrag: if uri and uri[-1] == "#" and result[-1] != "#": result = "%s#" % result return URIRef(result) # From: http://www.w3.org/TR/REC-xml#NT-CombiningChar # # * Name start characters must have one of the categories Ll, Lu, Lo, # Lt, Nl. # # * Name characters other than Name-start characters must have one of # the categories Mc, Me, Mn, Lm, or Nd. # # * Characters in the compatibility area (i.e. with character code # greater than #xF900 and less than #xFFFE) are not allowed in XML # names. # # * Characters which have a font or compatibility decomposition # (i.e. those with a "compatibility formatting tag" in field 5 of the # database -- marked by field 5 beginning with a "<") are not allowed. # # * The following characters are treated as name-start characters rather # than name characters, because the property file classifies them as # Alphabetic: [#x02BB-#x02C1], #x0559, #x06E5, #x06E6. # # * Characters #x20DD-#x20E0 are excluded (in accordance with Unicode # 2.0, section 5.14). # # * Character #x00B7 is classified as an extender, because the property # list so identifies it. # # * Character #x0387 is added as a name character, because #x00B7 is its # canonical equivalent. # # * Characters ':' and '_' are allowed as name-start characters. # # * Characters '-' and '.' are allowed as name characters. from unicodedata import category NAME_START_CATEGORIES = ["Ll", "Lu", "Lo", "Lt", "Nl"] NAME_CATEGORIES = NAME_START_CATEGORIES + ["Mc", "Me", "Mn", "Lm", "Nd"] ALLOWED_NAME_CHARS = ["\u00B7", "\u0387", "-", ".", "_"] # http://www.w3.org/TR/REC-xml-names/#NT-NCName # [4] NCName ::= (Letter | '_') (NCNameChar)* /* An XML Name, minus # the ":" */ # [5] NCNameChar ::= Letter | Digit | '.' | '-' | '_' | CombiningChar # | Extender def is_ncname(name): first = name[0] if first == "_" or category(first) in NAME_START_CATEGORIES: for i in range(1, len(name)): c = name[i] if not category(c) in NAME_CATEGORIES: if c in ALLOWED_NAME_CHARS: continue return 0 # if in compatibility area # if decomposition(c)!='': # return 0 return 1 else: return 0 XMLNS = "http://www.w3.org/XML/1998/namespace" def split_uri(uri): if uri.startswith(XMLNS): return (XMLNS, uri.split(XMLNS)[1]) length = len(uri) for i in range(0, length): c = uri[-i - 1] if not category(c) in NAME_CATEGORIES: if c in ALLOWED_NAME_CHARS: continue for j in range(-1 - i, length): if category(uri[j]) in NAME_START_CATEGORIES or uri[j] == "_": ns = uri[:j] if not ns: break ln = uri[j:] return (ns, ln) break raise Exception("Can't split '%s'" % uri)