Mercurial > repos > shellac > guppy_basecaller
view env/bin/cq @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
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#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 # Copyright (c) 2006,2007 Mitch Garnaat http://garnaat.org/ # # Permission is hereby granted, free of charge, to any person obtaining a # copy of this software and associated documentation files (the # "Software"), to deal in the Software without restriction, including # without limitation the rights to use, copy, modify, merge, publish, dis- # tribute, sublicense, and/or sell copies of the Software, and to permit # persons to whom the Software is furnished to do so, subject to the fol- # lowing conditions: # # The above copyright notice and this permission notice shall be included # in all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS # IN THE SOFTWARE. # import getopt, sys import boto.sqs from boto.sqs.connection import SQSConnection from boto.exception import SQSError def usage(): print 'cq [-c] [-q queue_name] [-o output_file] [-t timeout] [-r region]' def main(): try: opts, args = getopt.getopt(sys.argv[1:], 'hcq:o:t:r:', ['help', 'clear', 'queue=', 'output=', 'timeout=', 'region=']) except: usage() sys.exit(2) queue_name = '' output_file = '' timeout = 30 region = '' clear = False for o, a in opts: if o in ('-h', '--help'): usage() sys.exit() if o in ('-q', '--queue'): queue_name = a if o in ('-o', '--output'): output_file = a if o in ('-c', '--clear'): clear = True if o in ('-t', '--timeout'): timeout = int(a) if o in ('-r', '--region'): region = a if region: c = boto.sqs.connect_to_region(region) if c is None: print 'Invalid region (%s)' % region sys.exit(1) else: c = SQSConnection() if queue_name: try: rs = [c.create_queue(queue_name)] except SQSError as e: print 'An Error Occurred:' print '%s: %s' % (e.status, e.reason) print e.body sys.exit() else: try: rs = c.get_all_queues() except SQSError as e: print 'An Error Occurred:' print '%s: %s' % (e.status, e.reason) print e.body sys.exit() for q in rs: if clear: n = q.clear() print 'clearing %d messages from %s' % (n, q.id) elif output_file: q.dump(output_file) else: print q.id, q.count(vtimeout=timeout) if __name__ == "__main__": main()