Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/boltons/mathutils.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
---|---|
date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
children |
line wrap: on
line source
"""This module provides useful math functions on top of Python's built-in :mod:`math` module. """ from __future__ import division from math import ceil as _ceil, floor as _floor import bisect import binascii def clamp(x, lower=float('-inf'), upper=float('inf')): """Limit a value to a given range. Args: x (int or float): Number to be clamped. lower (int or float): Minimum value for x. upper (int or float): Maximum value for x. The returned value is guaranteed to be between *lower* and *upper*. Integers, floats, and other comparable types can be mixed. >>> clamp(1.0, 0, 5) 1.0 >>> clamp(-1.0, 0, 5) 0 >>> clamp(101.0, 0, 5) 5 >>> clamp(123, upper=5) 5 Similar to `numpy's clip`_ function. .. _numpy's clip: http://docs.scipy.org/doc/numpy/reference/generated/numpy.clip.html """ if upper < lower: raise ValueError('expected upper bound (%r) >= lower bound (%r)' % (upper, lower)) return min(max(x, lower), upper) def ceil(x, options=None): """Return the ceiling of *x*. If *options* is set, return the smallest integer or float from *options* that is greater than or equal to *x*. Args: x (int or float): Number to be tested. options (iterable): Optional iterable of arbitrary numbers (ints or floats). >>> VALID_CABLE_CSA = [1.5, 2.5, 4, 6, 10, 25, 35, 50] >>> ceil(3.5, options=VALID_CABLE_CSA) 4 >>> ceil(4, options=VALID_CABLE_CSA) 4 """ if options is None: return _ceil(x) options = sorted(options) i = bisect.bisect_left(options, x) if i == len(options): raise ValueError("no ceil options greater than or equal to: %r" % x) return options[i] def floor(x, options=None): """Return the floor of *x*. If *options* is set, return the largest integer or float from *options* that is less than or equal to *x*. Args: x (int or float): Number to be tested. options (iterable): Optional iterable of arbitrary numbers (ints or floats). >>> VALID_CABLE_CSA = [1.5, 2.5, 4, 6, 10, 25, 35, 50] >>> floor(3.5, options=VALID_CABLE_CSA) 2.5 >>> floor(2.5, options=VALID_CABLE_CSA) 2.5 """ if options is None: return _floor(x) options = sorted(options) i = bisect.bisect_right(options, x) if not i: raise ValueError("no floor options less than or equal to: %r" % x) return options[i - 1] try: _int_types = (int, long) bytes = str except NameError: # py3 has no long _int_types = (int,) unicode = str class Bits(object): ''' An immutable bit-string or bit-array object. Provides list-like access to bits as bools, as well as bitwise masking and shifting operators. Bits also make it easy to convert between many different useful representations: * bytes -- good for serializing raw binary data * int -- good for incrementing (e.g. to try all possible values) * list of bools -- good for iterating over or treating as flags * hex/bin string -- good for human readability ''' __slots__ = ('val', 'len') def __init__(self, val=0, len_=None): if type(val) not in _int_types: if type(val) is list: val = ''.join(['1' if e else '0' for e in val]) if type(val) is bytes: val = val.decode('ascii') if type(val) is unicode: if len_ is None: len_ = len(val) if val.startswith('0x'): len_ = (len_ - 2) * 4 if val.startswith('0x'): val = int(val, 16) else: if val: val = int(val, 2) else: val = 0 if type(val) not in _int_types: raise TypeError('initialized with bad type: {0}'.format(type(val).__name__)) if val < 0: raise ValueError('Bits cannot represent negative values') if len_ is None: len_ = len('{0:b}'.format(val)) if val > 2 ** len_: raise ValueError('value {0} cannot be represented with {1} bits'.format(val, len_)) self.val = val # data is stored internally as integer self.len = len_ def __getitem__(self, k): if type(k) is slice: return Bits(self.as_bin()[k]) if type(k) is int: if k >= self.len: raise IndexError(k) return bool((1 << (self.len - k - 1)) & self.val) raise TypeError(type(k)) def __len__(self): return self.len def __eq__(self, other): if type(self) is not type(other): return NotImplemented return self.val == other.val and self.len == other.len def __or__(self, other): if type(self) is not type(other): return NotImplemented return Bits(self.val | other.val, max(self.len, other.len)) def __and__(self, other): if type(self) is not type(other): return NotImplemented return Bits(self.val & other.val, max(self.len, other.len)) def __lshift__(self, other): return Bits(self.val << other, self.len + other) def __rshift__(self, other): return Bits(self.val >> other, self.len - other) def __hash__(self): return hash(self.val) def as_list(self): return [c == '1' for c in '{0:b}'.format(self.val)] def as_bin(self): return '{{0:0{0}b}}'.format(self.len).format(self.val) def as_hex(self): # make template to pad out to number of bytes necessary to represent bits tmpl = '%0{0}X'.format(2 * (self.len // 8 + ((self.len % 8) != 0))) ret = tmpl % self.val return ret def as_int(self): return self.val def as_bytes(self): return binascii.unhexlify(self.as_hex()) @classmethod def from_list(cls, list_): return cls(list_) @classmethod def from_bin(cls, bin): return cls(bin) @classmethod def from_hex(cls, hex): if isinstance(hex, bytes): hex = hex.decode('ascii') if not hex.startswith('0x'): hex = '0x' + hex return cls(hex) @classmethod def from_int(cls, int_, len_=None): return cls(int_, len_) @classmethod def from_bytes(cls, bytes_): return cls.from_hex(binascii.hexlify(bytes_)) def __repr__(self): cn = self.__class__.__name__ return "{0}('{1}')".format(cn, self.as_bin())