Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/boto/pyami/scriptbase.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
children |
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import os import sys from boto.utils import ShellCommand, get_ts import boto import boto.utils class ScriptBase(object): def __init__(self, config_file=None): self.instance_id = boto.config.get('Instance', 'instance-id', 'default') self.name = self.__class__.__name__ self.ts = get_ts() if config_file: boto.config.read(config_file) def notify(self, subject, body=''): boto.utils.notify(subject, body) def mkdir(self, path): if not os.path.isdir(path): try: os.mkdir(path) except: boto.log.error('Error creating directory: %s' % path) def umount(self, path): if os.path.ismount(path): self.run('umount %s' % path) def run(self, command, notify=True, exit_on_error=False, cwd=None): self.last_command = ShellCommand(command, cwd=cwd) if self.last_command.status != 0: boto.log.error('Error running command: "%s". Output: "%s"' % (command, self.last_command.output)) if notify: self.notify('Error encountered', 'Error running the following command:\n\t%s\n\nCommand output:\n\t%s' % \ (command, self.last_command.output)) if exit_on_error: sys.exit(-1) return self.last_command.status def main(self): pass