Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/cwltool/extensions.yml @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
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$base: http://commonwl.org/cwltool# $namespaces: cwl: "https://w3id.org/cwl/cwl#" $graph: - $import: https://w3id.org/cwl/CommonWorkflowLanguage.yml - name: LoadListingRequirement type: record extends: cwl:ProcessRequirement inVocab: false fields: class: type: string doc: "Always 'LoadListingRequirement'" jsonldPredicate: "_id": "@type" "_type": "@vocab" loadListing: type: - type: enum name: LoadListingEnum symbols: [no_listing, shallow_listing, deep_listing] - name: InplaceUpdateRequirement type: record inVocab: false extends: cwl:ProcessRequirement fields: class: type: string doc: "Always 'InplaceUpdateRequirement'" jsonldPredicate: "_id": "@type" "_type": "@vocab" inplaceUpdate: type: boolean - name: Secrets type: record inVocab: false extends: cwl:ProcessRequirement fields: class: type: string doc: "Always 'Secrets'" jsonldPredicate: "_id": "@type" "_type": "@vocab" secrets: type: string[] doc: | List one or more input parameters that are sensitive (such as passwords) which will be deliberately obscured from logging. jsonldPredicate: "_type": "@id" refScope: 0 - name: TimeLimit type: record inVocab: false extends: cwl:ProcessRequirement doc: | Set an upper limit on the execution time of a CommandLineTool or ExpressionTool. A tool execution which exceeds the time limit may be preemptively terminated and considered failed. May also be used by batch systems to make scheduling decisions. fields: - name: class type: string doc: "Always 'TimeLimit'" jsonldPredicate: "_id": "@type" "_type": "@vocab" - name: timelimit type: [long, string] doc: | The time limit, in seconds. A time limit of zero means no time limit. Negative time limits are an error. - name: WorkReuse type: record inVocab: false extends: cwl:ProcessRequirement doc: | For implementations that support reusing output from past work (on the assumption that same code and same input produce same results), control whether to enable or disable the reuse behavior for a particular tool or step (to accomodate situations where that assumption is incorrect). A reused step is not executed but instead returns the same output as the original execution. If `enableReuse` is not specified, correct tools should assume it is enabled by default. fields: - name: class type: string doc: "Always 'WorkReuse'" jsonldPredicate: "_id": "@type" "_type": "@vocab" - name: enableReuse type: [boolean, string] #default: true - name: NetworkAccess type: record inVocab: false extends: cwl:ProcessRequirement doc: | Indicate whether a process requires outgoing IPv4/IPv6 network access. Choice of IPv4 or IPv6 is implementation and site specific, correct tools must support both. If `networkAccess` is false or not specified, tools must not assume network access, except for localhost (the loopback device). If `networkAccess` is true, the tool must be able to make outgoing connections to network resources. Resources may be on a private subnet or the public Internet. However, implementations and sites may apply their own security policies to restrict what is accessible by the tool. Enabling network access does not imply a publically routable IP address or the ability to accept inbound connections. fields: - name: class type: string doc: "Always 'NetworkAccess'" jsonldPredicate: "_id": "@type" "_type": "@vocab" - name: networkAccess type: [boolean, string] - name: ProcessGenerator type: record inVocab: true extends: cwl:Process documentRoot: true fields: - name: class jsonldPredicate: "_id": "@type" "_type": "@vocab" type: string - name: run type: [string, cwl:Process] jsonldPredicate: _id: "cwl:run" _type: "@id" doc: | Specifies the process to run.