Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/cwltool/tests/test_parallel.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
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import json from cwltool.context import RuntimeContext from cwltool.executors import MultithreadedJobExecutor from cwltool import load_tool from .util import get_data, get_windows_safe_factory, windows_needs_docker @windows_needs_docker def test_sequential_workflow(tmpdir): test_file = "tests/wf/count-lines1-wf.cwl" executor = MultithreadedJobExecutor() runtime_context = RuntimeContext() runtime_context.outdir = str(tmpdir) runtime_context.select_resources = executor.select_resources factory = get_windows_safe_factory( executor=executor, runtime_context=runtime_context) echo = factory.make(get_data(test_file)) file_contents = {"class": "File", "location": get_data("tests/wf/whale.txt")} assert echo(file1=file_contents) == {"count_output": 16} @windows_needs_docker def test_scattered_workflow(): test_file = "tests/wf/scatter-wf4.cwl" job_file = "tests/wf/scatter-job2.json" factory = get_windows_safe_factory(executor=MultithreadedJobExecutor()) echo = factory.make(get_data(test_file)) with open(get_data(job_file)) as job: assert echo(**json.load(job)) == {'out': ['foo one three', 'foo two four']}