Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/galaxy/util/ucsc.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
---|---|
date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
children |
line wrap: on
line source
""" Utilities for dealing with UCSC data. """ class UCSCLimitException(Exception): pass class UCSCOutWrapper(object): """File-like object that throws an exception if it encounters the UCSC limit error lines""" def __init__(self, other): self.other = iter(other) # Need one line of lookahead to be sure we are hitting the limit message self.lookahead = None def __iter__(self): return self def __next__(self): if self.lookahead is None: line = next(self.other) else: line = self.lookahead self.lookahead = None if line.startswith("----------"): next_line = next(self.other) if next_line.startswith("Reached output limit"): raise UCSCLimitException(next_line.strip()) else: self.lookahead = next_line return line def next(self): return self.__next__() def readline(self): return self.next()