Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/networkx/readwrite/gpickle.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
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""" ************** Pickled Graphs ************** Read and write NetworkX graphs as Python pickles. "The pickle module implements a fundamental, but powerful algorithm for serializing and de-serializing a Python object structure. "Pickling" is the process whereby a Python object hierarchy is converted into a byte stream, and "unpickling" is the inverse operation, whereby a byte stream is converted back into an object hierarchy." Note that NetworkX graphs can contain any hashable Python object as node (not just integers and strings). For arbitrary data types it may be difficult to represent the data as text. In that case using Python pickles to store the graph data can be used. Format ------ See https://docs.python.org/2/library/pickle.html """ __author__ = """Aric Hagberg (hagberg@lanl.gov)\nDan Schult (dschult@colgate.edu)""" # Copyright (C) 2004-2019 by # Aric Hagberg <hagberg@lanl.gov> # Dan Schult <dschult@colgate.edu> # Pieter Swart <swart@lanl.gov> # All rights reserved. # BSD license. __all__ = ['read_gpickle', 'write_gpickle'] import networkx as nx from networkx.utils import open_file try: import cPickle as pickle except ImportError: import pickle @open_file(1, mode='wb') def write_gpickle(G, path, protocol=pickle.HIGHEST_PROTOCOL): """Write graph in Python pickle format. Pickles are a serialized byte stream of a Python object [1]_. This format will preserve Python objects used as nodes or edges. Parameters ---------- G : graph A NetworkX graph path : file or string File or filename to write. Filenames ending in .gz or .bz2 will be compressed. protocol : integer Pickling protocol to use. Default value: ``pickle.HIGHEST_PROTOCOL``. Examples -------- >>> G = nx.path_graph(4) >>> nx.write_gpickle(G, "test.gpickle") References ---------- .. [1] https://docs.python.org/2/library/pickle.html """ pickle.dump(G, path, protocol) @open_file(0, mode='rb') def read_gpickle(path): """Read graph object in Python pickle format. Pickles are a serialized byte stream of a Python object [1]_. This format will preserve Python objects used as nodes or edges. Parameters ---------- path : file or string File or filename to write. Filenames ending in .gz or .bz2 will be uncompressed. Returns ------- G : graph A NetworkX graph Examples -------- >>> G = nx.path_graph(4) >>> nx.write_gpickle(G, "test.gpickle") >>> G = nx.read_gpickle("test.gpickle") References ---------- .. [1] https://docs.python.org/2/library/pickle.html """ return pickle.load(path) # fixture for pytest def teardown_module(module): import os os.unlink('test.gpickle')