Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/planemo/engine/cwltool.py @ 3:758bc20232e8 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:20:52 -0400 |
parents | 26e78fe6e8c4 |
children |
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"""Module contianing the :class:`CwlToolEngine` implementation of :class:`Engine`.""" from planemo import cwl from planemo.runnable import RunnableType from .interface import BaseEngine class CwlToolEngine(BaseEngine): """An :class:`Engine` implementation backed by cwltool. More information on cwltool can be found at https://github.com/common-workflow-language/cwltool. """ handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] def _run(self, runnable, job_path): """Run CWL job using cwltool.""" path = runnable.path return cwl.run_cwltool(self._ctx, path, job_path, **self._kwds) __all__ = ( "CwlToolEngine", )