Mercurial > repos > shellac > guppy_basecaller
view env/bin/cwutil @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
---|---|
date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
children |
line wrap: on
line source
#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 # Author: Chris Moyer <cmoyer@newstex.com> # Description: CloudWatch Utility # For listing stats, creating alarms, and managing # other CloudWatch aspects import boto cw = boto.connect_cloudwatch() from datetime import datetime, timedelta def _parse_time(time_string): """Internal function to parse a time string""" def _parse_dict(d_string): result = {} if d_string: for d in d_string.split(","): d = d.split(":") result[d[0]] = d[1] return result def ls(namespace=None): """ List metrics, optionally filtering by a specific namespace namespace: Optional Namespace to filter on """ print "%-10s %-50s %s" % ("Namespace", "Metric Name", "Dimensions") print "-"*80 for m in cw.list_metrics(): if namespace is None or namespace.upper() in m.namespace: print "%-10s %-50s %s" % (m.namespace, m.name, m.dimensions) def stats(namespace, metric_name, dimensions=None, statistics="Average", start_time=None, end_time=None, period=60, unit=None): """ Lists the statistics for a specific metric namespace: The namespace to use, usually "AWS/EC2", "AWS/SQS", etc. metric_name: The name of the metric to track, pulled from `ls` dimensions: The dimensions to use, formatted as Name:Value (such as QueueName:myQueue) statistics: The statistics to measure, defaults to "Average" 'Minimum', 'Maximum', 'Sum', 'Average', 'SampleCount' start_time: Start time, default to now - 1 day end_time: End time, default to now period: Period/interval for counts, default to 60 minutes unit: Unit to track, default depends on what metric is being tracked """ # Parse the dimensions dimensions = _parse_dict(dimensions) # Parse the times if end_time: end_time = _parse_time(end_time) else: end_time = datetime.utcnow() if start_time: start_time = _parse_time(start_time) else: start_time = datetime.utcnow() - timedelta(days=1) print "%-30s %s" % ('Timestamp', statistics) print "-"*50 data = {} for m in cw.get_metric_statistics(int(period), start_time, end_time, metric_name, namespace, statistics, dimensions, unit): data[m['Timestamp']] = m[statistics] keys = data.keys() keys.sort() for k in keys: print "%-30s %s" % (k, data[k]) def put(namespace, metric_name, dimensions=None, value=None, unit=None, statistics=None, timestamp=None): """ Publish custom metrics namespace: The namespace to use; values starting with "AWS/" are reserved metric_name: The name of the metric to update dimensions: The dimensions to use, formatted as Name:Value (such as QueueName:myQueue) value: The value to store, mutually exclusive with `statistics` statistics: The statistics to store, mutually exclusive with `value` (must specify all of "Minimum", "Maximum", "Sum", "SampleCount") timestamp: The timestamp of this measurement, default is current server time unit: Unit to track, default depends on what metric is being tracked """ def simplify(lst): return lst[0] if len(lst) == 1 else lst print cw.put_metric_data(namespace, simplify(metric_name.split(';')), dimensions = simplify(map(_parse_dict, dimensions.split(';'))) if dimensions else None, value = simplify(value.split(';')) if value else None, statistics = simplify(map(_parse_dict, statistics.split(';'))) if statistics else None, timestamp = simplify(timestamp.split(';')) if timestamp else None, unit = simplify(unit.split(';')) if unit else None) def help(fnc=None): """ Print help message, optionally about a specific function """ import inspect self = sys.modules['__main__'] if fnc: try: cmd = getattr(self, fnc) except: cmd = None if not inspect.isfunction(cmd): print "No function named: %s found" % fnc sys.exit(2) (args, varargs, varkw, defaults) = inspect.getargspec(cmd) print cmd.__doc__ print "Usage: %s %s" % (fnc, " ".join([ "[%s]" % a for a in args])) else: print "Usage: cwutil [command]" for cname in dir(self): if not cname.startswith("_") and not cname == "cmd": cmd = getattr(self, cname) if inspect.isfunction(cmd): doc = cmd.__doc__ print "\t%s - %s" % (cname, doc) sys.exit(1) if __name__ == "__main__": import sys self = sys.modules['__main__'] if len(sys.argv) >= 2: try: cmd = getattr(self, sys.argv[1]) except: cmd = None args = sys.argv[2:] else: cmd = help args = [] if not cmd: cmd = help try: cmd(*args) except TypeError as e: print e help(cmd.__name__)