Mercurial > repos > shellac > guppy_basecaller
view env/bin/fetch_file @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
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#!/Users/pldms/Development/Projects/2020/david-matthews-galaxy/guppy_basecaller/env/bin/python3 # Copyright (c) 2009 Chris Moyer http://coredumped.org # # Permission is hereby granted, free of charge, to any person obtaining a # copy of this software and associated documentation files (the # "Software"), to deal in the Software without restriction, including # without limitation the rights to use, copy, modify, merge, publish, dis- # tribute, sublicense, and/or sell copies of the Software, and to permit # persons to whom the Software is furnished to do so, subject to the fol- # lowing conditions: # # The above copyright notice and this permission notice shall be included # in all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS # IN THE SOFTWARE. # import sys if __name__ == "__main__": from optparse import OptionParser usage = """%prog [options] URI Fetch a URI using the boto library and (by default) pipe contents to STDOUT The URI can be either an HTTP URL, or "s3://bucket_name/key_name" """ parser = OptionParser(version="0.1", usage=usage) parser.add_option("-o", "--out-file", help="File to receive output instead of STDOUT", dest="outfile") (options, args) = parser.parse_args() if len(args) < 1: parser.print_help() sys.exit(1) from boto.utils import fetch_file f = fetch_file(args[0]) if options.outfile: open(options.outfile, "w").write(f.read()) else: print(f.read())