Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/boltons/listutils.py @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
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# -*- coding: utf-8 -*- """Python's builtin :class:`list` is a very fast and efficient sequence type, but it could be better for certain access patterns, such as non-sequential insertion into a large lists. ``listutils`` provides a pure-Python solution to this problem. For utilities for working with iterables and lists, check out :mod:`iterutils`. For the a :class:`list`-based version of :class:`collections.namedtuple`, check out :mod:`namedutils`. """ from __future__ import print_function, division import operator from math import log as math_log from itertools import chain, islice try: from typeutils import make_sentinel _MISSING = make_sentinel(var_name='_MISSING') except ImportError: _MISSING = object() try: xrange except NameError: # Python 3 compat xrange = range # TODO: expose splaylist? __all__ = ['BList', 'BarrelList'] # TODO: comparators # TODO: keep track of list lengths and bisect to the right list for # faster getitem (and slightly slower setitem and delitem ops) class BarrelList(list): """The ``BarrelList`` is a :class:`list` subtype backed by many dynamically-scaled sublists, to provide better scaling and random insertion/deletion characteristics. It is a subtype of the builtin :class:`list` and has an identical API, supporting indexing, slicing, sorting, etc. If application requirements call for something more performant, consider the `blist module available on PyPI`_. The name comes by way of Kurt Rose, who said it reminded him of barrel shifters. Not sure how, but it's BList-like, so the name stuck. BList is of course a reference to `B-trees`_. Args: iterable: An optional iterable of initial values for the list. >>> blist = BList(xrange(100000)) >>> blist.pop(50000) 50000 >>> len(blist) 99999 >>> len(blist.lists) # how many underlying lists 8 >>> slice_idx = blist.lists[0][-1] >>> blist[slice_idx:slice_idx + 2] BarrelList([11637, 11638]) Slicing is supported and works just fine across list borders, returning another instance of the BarrelList. .. _blist module available on PyPI: https://pypi.python.org/pypi/blist .. _B-trees: https://en.wikipedia.org/wiki/B-tree """ _size_factor = 1520 "This size factor is the result of tuning using the tune() function below." def __init__(self, iterable=None): self.lists = [[]] if iterable: self.extend(iterable) @property def _cur_size_limit(self): len_self, size_factor = len(self), self._size_factor return int(round(size_factor * math_log(len_self + 2, 2))) def _translate_index(self, index): if index < 0: index += len(self) rel_idx, lists = index, self.lists for list_idx in range(len(lists)): len_list = len(lists[list_idx]) if rel_idx < len_list: break rel_idx -= len_list if rel_idx < 0: return None, None return list_idx, rel_idx def _balance_list(self, list_idx): if list_idx < 0: list_idx += len(self.lists) cur_list, len_self = self.lists[list_idx], len(self) size_limit = self._cur_size_limit if len(cur_list) > size_limit: half_limit = size_limit // 2 while len(cur_list) > half_limit: next_list_idx = list_idx + 1 self.lists.insert(next_list_idx, cur_list[-half_limit:]) del cur_list[-half_limit:] return True return False def insert(self, index, item): if len(self.lists) == 1: self.lists[0].insert(index, item) self._balance_list(0) else: list_idx, rel_idx = self._translate_index(index) if list_idx is None: raise IndexError() self.lists[list_idx].insert(rel_idx, item) self._balance_list(list_idx) return def append(self, item): self.lists[-1].append(item) def extend(self, iterable): self.lists[-1].extend(iterable) def pop(self, *a): lists = self.lists if len(lists) == 1 and not a: return self.lists[0].pop() index = a and a[0] if index == () or index is None or index == -1: ret = lists[-1].pop() if len(lists) > 1 and not lists[-1]: lists.pop() else: list_idx, rel_idx = self._translate_index(index) if list_idx is None: raise IndexError() ret = lists[list_idx].pop(rel_idx) self._balance_list(list_idx) return ret def iter_slice(self, start, stop, step=None): iterable = self # TODO: optimization opportunities abound # start_list_idx, stop_list_idx = 0, len(self.lists) if start is None: start = 0 if stop is None: stop = len(self) if step is not None and step < 0: step = -step start, stop = -start, -stop - 1 iterable = reversed(self) if start < 0: start += len(self) # start_list_idx, start_rel_idx = self._translate_index(start) if stop < 0: stop += len(self) # stop_list_idx, stop_rel_idx = self._translate_index(stop) return islice(iterable, start, stop, step) def del_slice(self, start, stop, step=None): if step is not None and abs(step) > 1: # punt new_list = chain(self.iter_slice(0, start, step), self.iter_slice(stop, None, step)) self.lists[0][:] = new_list self._balance_list(0) return if start is None: start = 0 if stop is None: stop = len(self) start_list_idx, start_rel_idx = self._translate_index(start) stop_list_idx, stop_rel_idx = self._translate_index(stop) if start_list_idx is None: raise IndexError() if stop_list_idx is None: raise IndexError() if start_list_idx == stop_list_idx: del self.lists[start_list_idx][start_rel_idx:stop_rel_idx] elif start_list_idx < stop_list_idx: del self.lists[start_list_idx + 1:stop_list_idx] del self.lists[start_list_idx][start_rel_idx:] del self.lists[stop_list_idx][:stop_rel_idx] else: assert False, ('start list index should never translate to' ' greater than stop list index') __delslice__ = del_slice @classmethod def from_iterable(cls, it): return cls(it) def __iter__(self): return chain(*self.lists) def __reversed__(self): return chain.from_iterable(reversed(l) for l in reversed(self.lists)) def __len__(self): return sum([len(l) for l in self.lists]) def __contains__(self, item): for cur in self.lists: if item in cur: return True return False def __getitem__(self, index): try: start, stop, step = index.start, index.stop, index.step except AttributeError: index = operator.index(index) else: iter_slice = self.iter_slice(start, stop, step) ret = self.from_iterable(iter_slice) return ret list_idx, rel_idx = self._translate_index(index) if list_idx is None: raise IndexError() return self.lists[list_idx][rel_idx] def __delitem__(self, index): try: start, stop, step = index.start, index.stop, index.step except AttributeError: index = operator.index(index) else: self.del_slice(start, stop, step) return list_idx, rel_idx = self._translate_index(index) if list_idx is None: raise IndexError() del self.lists[list_idx][rel_idx] def __setitem__(self, index, item): try: start, stop, step = index.start, index.stop, index.step except AttributeError: index = operator.index(index) else: if len(self.lists) == 1: self.lists[0][index] = item else: tmp = list(self) tmp[index] = item self.lists[:] = [tmp] self._balance_list(0) return list_idx, rel_idx = self._translate_index(index) if list_idx is None: raise IndexError() self.lists[list_idx][rel_idx] = item def __getslice__(self, start, stop): iter_slice = self.iter_slice(start, stop, 1) return self.from_iterable(iter_slice) def __setslice__(self, start, stop, sequence): if len(self.lists) == 1: self.lists[0][start:stop] = sequence else: tmp = list(self) tmp[start:stop] = sequence self.lists[:] = [tmp] self._balance_list(0) return def __repr__(self): return '%s(%r)' % (self.__class__.__name__, list(self)) def sort(self): # poor pythonist's mergesort, it's faster than sorted(self) # when the lists' average length is greater than 512. if len(self.lists) == 1: self.lists[0].sort() else: for li in self.lists: li.sort() tmp_sorted = sorted(chain.from_iterable(self.lists)) del self.lists[:] self.lists[0] = tmp_sorted self._balance_list(0) def reverse(self): for cur in self.lists: cur.reverse() self.lists.reverse() def count(self, item): return sum([cur.count(item) for cur in self.lists]) def index(self, item): len_accum = 0 for cur in self.lists: try: rel_idx = cur.index(item) return len_accum + rel_idx except ValueError: len_accum += len(cur) raise ValueError('%r is not in list' % (item,)) BList = BarrelList class SplayList(list): """Like a `splay tree`_, the SplayList facilitates moving higher utility items closer to the front of the list for faster access. .. _splay tree: https://en.wikipedia.org/wiki/Splay_tree """ def shift(self, item_index, dest_index=0): if item_index == dest_index: return item = self.pop(item_index) self.insert(dest_index, item) def swap(self, item_index, dest_index): self[dest_index], self[item_index] = self[item_index], self[dest_index]