Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/boto/glacier/writer.py @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
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# -*- coding: utf-8 -*- # Copyright (c) 2012 Thomas Parslow http://almostobsolete.net/ # Copyright (c) 2012 Robie Basak <robie@justgohome.co.uk> # Tree hash implementation from Aaron Brady bradya@gmail.com # # Permission is hereby granted, free of charge, to any person obtaining a # copy of this software and associated documentation files (the # "Software"), to deal in the Software without restriction, including # without limitation the rights to use, copy, modify, merge, publish, dis- # tribute, sublicense, and/or sell copies of the Software, and to permit # persons to whom the Software is furnished to do so, subject to the fol- # lowing conditions: # # The above copyright notice and this permission notice shall be included # in all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL- # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS # IN THE SOFTWARE. # import hashlib from boto.glacier.utils import chunk_hashes, tree_hash, bytes_to_hex # This import is provided for backwards compatibility. This function is # now in boto.glacier.utils, but any existing code can still import # this directly from this module. from boto.glacier.utils import compute_hashes_from_fileobj _ONE_MEGABYTE = 1024 * 1024 class _Partitioner(object): """Convert variable-size writes into part-sized writes Call write(data) with variable sized data as needed to write all data. Call flush() after all data is written. This instance will call send_fn(part_data) as needed in part_size pieces, except for the final part which may be shorter than part_size. Make sure to call flush() to ensure that a short final part results in a final send_fn call. """ def __init__(self, part_size, send_fn): self.part_size = part_size self.send_fn = send_fn self._buffer = [] self._buffer_size = 0 def write(self, data): if data == b'': return self._buffer.append(data) self._buffer_size += len(data) while self._buffer_size > self.part_size: self._send_part() def _send_part(self): data = b''.join(self._buffer) # Put back any data remaining over the part size into the # buffer if len(data) > self.part_size: self._buffer = [data[self.part_size:]] self._buffer_size = len(self._buffer[0]) else: self._buffer = [] self._buffer_size = 0 # The part we will send part = data[:self.part_size] self.send_fn(part) def flush(self): if self._buffer_size > 0: self._send_part() class _Uploader(object): """Upload to a Glacier upload_id. Call upload_part for each part (in any order) and then close to complete the upload. """ def __init__(self, vault, upload_id, part_size, chunk_size=_ONE_MEGABYTE): self.vault = vault self.upload_id = upload_id self.part_size = part_size self.chunk_size = chunk_size self.archive_id = None self._uploaded_size = 0 self._tree_hashes = [] self.closed = False def _insert_tree_hash(self, index, raw_tree_hash): list_length = len(self._tree_hashes) if index >= list_length: self._tree_hashes.extend([None] * (list_length - index + 1)) self._tree_hashes[index] = raw_tree_hash def upload_part(self, part_index, part_data): """Upload a part to Glacier. :param part_index: part number where 0 is the first part :param part_data: data to upload corresponding to this part """ if self.closed: raise ValueError("I/O operation on closed file") # Create a request and sign it part_tree_hash = tree_hash(chunk_hashes(part_data, self.chunk_size)) self._insert_tree_hash(part_index, part_tree_hash) hex_tree_hash = bytes_to_hex(part_tree_hash) linear_hash = hashlib.sha256(part_data).hexdigest() start = self.part_size * part_index content_range = (start, (start + len(part_data)) - 1) response = self.vault.layer1.upload_part(self.vault.name, self.upload_id, linear_hash, hex_tree_hash, content_range, part_data) response.read() self._uploaded_size += len(part_data) def skip_part(self, part_index, part_tree_hash, part_length): """Skip uploading of a part. The final close call needs to calculate the tree hash and total size of all uploaded data, so this is the mechanism for resume functionality to provide it without actually uploading the data again. :param part_index: part number where 0 is the first part :param part_tree_hash: binary tree_hash of part being skipped :param part_length: length of part being skipped """ if self.closed: raise ValueError("I/O operation on closed file") self._insert_tree_hash(part_index, part_tree_hash) self._uploaded_size += part_length def close(self): if self.closed: return if None in self._tree_hashes: raise RuntimeError("Some parts were not uploaded.") # Complete the multiplart glacier upload hex_tree_hash = bytes_to_hex(tree_hash(self._tree_hashes)) response = self.vault.layer1.complete_multipart_upload( self.vault.name, self.upload_id, hex_tree_hash, self._uploaded_size) self.archive_id = response['ArchiveId'] self.closed = True def generate_parts_from_fobj(fobj, part_size): data = fobj.read(part_size) while data: yield data.encode('utf-8') data = fobj.read(part_size) def resume_file_upload(vault, upload_id, part_size, fobj, part_hash_map, chunk_size=_ONE_MEGABYTE): """Resume upload of a file already part-uploaded to Glacier. The resumption of an upload where the part-uploaded section is empty is a valid degenerate case that this function can handle. In this case, part_hash_map should be an empty dict. :param vault: boto.glacier.vault.Vault object. :param upload_id: existing Glacier upload id of upload being resumed. :param part_size: part size of existing upload. :param fobj: file object containing local data to resume. This must read from the start of the entire upload, not just from the point being resumed. Use fobj.seek(0) to achieve this if necessary. :param part_hash_map: {part_index: part_tree_hash, ...} of data already uploaded. Each supplied part_tree_hash will be verified and the part re-uploaded if there is a mismatch. :param chunk_size: chunk size of tree hash calculation. This must be 1 MiB for Amazon. """ uploader = _Uploader(vault, upload_id, part_size, chunk_size) for part_index, part_data in enumerate( generate_parts_from_fobj(fobj, part_size)): part_tree_hash = tree_hash(chunk_hashes(part_data, chunk_size)) if (part_index not in part_hash_map or part_hash_map[part_index] != part_tree_hash): uploader.upload_part(part_index, part_data) else: uploader.skip_part(part_index, part_tree_hash, len(part_data)) uploader.close() return uploader.archive_id class Writer(object): """ Presents a file-like object for writing to a Amazon Glacier Archive. The data is written using the multi-part upload API. """ def __init__(self, vault, upload_id, part_size, chunk_size=_ONE_MEGABYTE): self.uploader = _Uploader(vault, upload_id, part_size, chunk_size) self.partitioner = _Partitioner(part_size, self._upload_part) self.closed = False self.next_part_index = 0 def write(self, data): if self.closed: raise ValueError("I/O operation on closed file") self.partitioner.write(data) def _upload_part(self, part_data): self.uploader.upload_part(self.next_part_index, part_data) self.next_part_index += 1 def close(self): if self.closed: return self.partitioner.flush() self.uploader.close() self.closed = True def get_archive_id(self): self.close() return self.uploader.archive_id @property def current_tree_hash(self): """ Returns the current tree hash for the data that's been written **so far**. Only once the writing is complete is the final tree hash returned. """ return tree_hash(self.uploader._tree_hashes) @property def current_uploaded_size(self): """ Returns the current uploaded size for the data that's been written **so far**. Only once the writing is complete is the final uploaded size returned. """ return self.uploader._uploaded_size @property def upload_id(self): return self.uploader.upload_id @property def vault(self): return self.uploader.vault