Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/rdflib/plugins/sparql/sparql.py @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
children |
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import collections import itertools import datetime from rdflib.namespace import NamespaceManager from rdflib import Variable, BNode, Graph, ConjunctiveGraph, URIRef, Literal from rdflib.term import Node from .parserutils import CompValue import rdflib.plugins.sparql from rdflib.plugins.sparql.compat import Mapping, MutableMapping class SPARQLError(Exception): def __init__(self, msg=None): Exception.__init__(self, msg) class NotBoundError(SPARQLError): def __init__(self, msg=None): SPARQLError.__init__(self, msg) class AlreadyBound(SPARQLError): """Raised when trying to bind a variable that is already bound!""" def __init__(self): SPARQLError.__init__(self) class SPARQLTypeError(SPARQLError): def __init__(self, msg): SPARQLError.__init__(self, msg) class Bindings(MutableMapping): """ A single level of a stack of variable-value bindings. Each dict keeps a reference to the dict below it, any failed lookup is propegated back In python 3.3 this could be a collections.ChainMap """ def __init__(self, outer=None, d=[]): self._d = dict(d) self.outer = outer def __getitem__(self, key): try: return self._d[key] except KeyError: if not self.outer: raise return self.outer[key] def __contains__(self, key): try: self[key] return True except KeyError: return False def __setitem__(self, key, value): self._d[key] = value def __delitem__(self, key): raise Exception("DelItem is not implemented!") def __len__(self): i = 0 for x in self: i += 1 return i def __iter__(self): d = self while d is not None: for i in dict.__iter__(d._d): yield i d = d.outer def __str__(self): return "Bindings({"+", ".join((k, self[k]) for k in self)+"})" def __repr__(self): return str(self) class FrozenDict(Mapping): """ An immutable hashable dict Taken from http://stackoverflow.com/a/2704866/81121 """ def __init__(self, *args, **kwargs): self._d = dict(*args, **kwargs) self._hash = None def __iter__(self): return iter(self._d) def __len__(self): return len(self._d) def __getitem__(self, key): return self._d[key] def __hash__(self): # It would have been simpler and maybe more obvious to # use hash(tuple(sorted(self._d.iteritems()))) from this discussion # so far, but this solution is O(n). I don't know what kind of # n we are going to run into, but sometimes it's hard to resist the # urge to optimize when it will gain improved algorithmic performance. if self._hash is None: self._hash = 0 for key, value in self.items(): self._hash ^= hash(key) self._hash ^= hash(value) return self._hash def project(self, vars): return FrozenDict( (x for x in self.items() if x[0] in vars)) def disjointDomain(self, other): return not bool(set(self).intersection(other)) def compatible(self, other): for k in self: try: if self[k] != other[k]: return False except KeyError: pass return True def merge(self, other): res = FrozenDict( itertools.chain(iter(self.items()), iter(other.items()))) return res def __str__(self): return str(self._d) def __repr__(self): return repr(self._d) class FrozenBindings(FrozenDict): def __init__(self, ctx, *args, **kwargs): FrozenDict.__init__(self, *args, **kwargs) self.ctx = ctx def __getitem__(self, key): if not isinstance(key, Node): key = Variable(key) if not type(key) in (BNode, Variable): return key return self._d[key] def project(self, vars): return FrozenBindings( self.ctx, (x for x in self.items() if x[0] in vars)) def merge(self, other): res = FrozenBindings( self.ctx, itertools.chain(iter(self.items()), iter(other.items()))) return res def _now(self): return self.ctx.now def _bnodes(self): return self.ctx.bnodes def _prologue(self): return self.ctx.prologue prologue = property(_prologue) bnodes = property(_bnodes) now = property(_now) def forget(self, before, _except=None): """ return a frozen dict only of bindings made in self since before """ if not _except : _except = [] # bindings from initBindings are newer forgotten return FrozenBindings(self.ctx, (x for x in self.items() if x[0] in _except or x[0] in self.ctx.initBindings or before[x[0]] is None)) def remember(self, these): """ return a frozen dict only of bindings in these """ return FrozenBindings(self.ctx, (x for x in self.items() if x[0] in these)) class QueryContext(object): """ Query context - passed along when evaluating the query """ def __init__(self, graph=None, bindings=None, initBindings=None): self.initBindings = initBindings self.bindings = Bindings(d=bindings or []) if initBindings: self.bindings.update(initBindings) if isinstance(graph, ConjunctiveGraph): self._dataset = graph if rdflib.plugins.sparql.SPARQL_DEFAULT_GRAPH_UNION: self.graph = self.dataset else: self.graph = self.dataset.default_context else: self._dataset = None self.graph = graph self.prologue = None self.now = datetime.datetime.now() self.bnodes = collections.defaultdict(BNode) def clone(self, bindings=None): r = QueryContext( self._dataset if self._dataset is not None else self.graph, bindings or self.bindings, initBindings=self.initBindings) r.prologue = self.prologue r.graph = self.graph r.bnodes = self.bnodes return r def _get_dataset(self): if self._dataset is None: raise Exception( 'You performed a query operation requiring ' + 'a dataset (i.e. ConjunctiveGraph), but ' + 'operating currently on a single graph.') return self._dataset dataset = property(_get_dataset, doc="current dataset") def load(self, source, default=False, **kwargs): def _load(graph, source): try: return graph.load(source, **kwargs) except: pass try: return graph.load(source, format='n3', **kwargs) except: pass try: return graph.load(source, format='nt', **kwargs) except: raise Exception( "Could not load %s as either RDF/XML, N3 or NTriples" % ( source)) if not rdflib.plugins.sparql.SPARQL_LOAD_GRAPHS: # we are not loading - if we already know the graph # being "loaded", just add it to the default-graph if default: self.graph += self.dataset.get_context(source) else: if default: _load(self.graph, source) else: _load(self.dataset, source) def __getitem__(self, key): # in SPARQL BNodes are just labels if not type(key) in (BNode, Variable): return key try: return self.bindings[key] except KeyError: return None def get(self, key, default=None): try: return self[key] except KeyError: return default def solution(self, vars=None): """ Return a static copy of the current variable bindings as dict """ if vars: return FrozenBindings( self, ((k, v) for k, v in self.bindings.items() if k in vars)) else: return FrozenBindings(self, iter(self.bindings.items())) def __setitem__(self, key, value): if key in self.bindings and self.bindings[key] != value: raise AlreadyBound() self.bindings[key] = value def pushGraph(self, graph): r = self.clone() r.graph = graph return r def push(self): r = self.clone(Bindings(self.bindings)) return r def clean(self): return self.clone([]) # def pop(self): # self.bindings = self.bindings.outer # if self.bindings is None: # raise Exception("We've bottomed out of the bindings stack!") def thaw(self, frozenbindings): """ Create a new read/write query context from the given solution """ c = self.clone(frozenbindings) return c class Prologue(object): """ A class for holding prefixing bindings and base URI information """ def __init__(self): self.base = None self.namespace_manager = NamespaceManager( Graph()) # ns man needs a store def resolvePName(self, prefix, localname): ns = self.namespace_manager.store.namespace(prefix or "") if ns is None: raise Exception('Unknown namespace prefix : %s' % prefix) return URIRef(ns + (localname or "")) def bind(self, prefix, uri): self.namespace_manager.bind(prefix, uri, replace=True) def absolutize(self, iri): """ Apply BASE / PREFIXes to URIs (and to datatypes in Literals) TODO: Move resolving URIs to pre-processing """ if isinstance(iri, CompValue): if iri.name == 'pname': return self.resolvePName(iri.prefix, iri.localname) if iri.name == 'literal': return Literal( iri.string, lang=iri.lang, datatype=self.absolutize(iri.datatype)) elif isinstance(iri, URIRef) and not ':' in iri: return URIRef(iri, base=self.base) return iri class Query(object): """ A parsed and translated query """ def __init__(self, prologue, algebra): self.prologue = prologue self.algebra = algebra