Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/rdflib/tools/rdf2dot.py @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
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""" A commandline tool for drawing RDF graphs in Graphviz DOT format You can draw the graph of an RDF file directly: .. code-block: bash rdf2dot my_rdf_file.rdf | dot -Tpng | display """ import rdflib import rdflib.extras.cmdlineutils import sys import cgi import collections from rdflib import XSD LABEL_PROPERTIES = [rdflib.RDFS.label, rdflib.URIRef("http://purl.org/dc/elements/1.1/title"), rdflib.URIRef("http://xmlns.com/foaf/0.1/name"), rdflib.URIRef("http://www.w3.org/2006/vcard/ns#fn"), rdflib.URIRef("http://www.w3.org/2006/vcard/ns#org") ] XSDTERMS = [ XSD[x] for x in ( "anyURI", "base64Binary", "boolean", "byte", "date", "dateTime", "decimal", "double", "duration", "float", "gDay", "gMonth", "gMonthDay", "gYear", "gYearMonth", "hexBinary", "ID", "IDREF", "IDREFS", "int", "integer", "language", "long", "Name", "NCName", "negativeInteger", "NMTOKEN", "NMTOKENS", "nonNegativeInteger", "nonPositiveInteger", "normalizedString", "positiveInteger", "QName", "short", "string", "time", "token", "unsignedByte", "unsignedInt", "unsignedLong", "unsignedShort")] EDGECOLOR = "blue" NODECOLOR = "black" ISACOLOR = "black" def rdf2dot(g, stream, opts={}): """ Convert the RDF graph to DOT writes the dot output to the stream """ fields = collections.defaultdict(set) nodes = {} def node(x): if x not in nodes: nodes[x] = "node%d" % len(nodes) return nodes[x] def label(x, g): for labelProp in LABEL_PROPERTIES: l = g.value(x, labelProp) if l: return l try: return g.namespace_manager.compute_qname(x)[2] except: return x def formatliteral(l, g): v = cgi.escape(l) if l.datatype: return '"%s"^^%s' % (v, qname(l.datatype, g)) elif l.language: return '"%s"@%s' % (v, l.language) return '"%s"' % v def qname(x, g): try: q = g.compute_qname(x) return q[0] + ":" + q[2] except: return x def color(p): return "BLACK" stream.write("digraph { \n node [ fontname=\"DejaVu Sans\" ] ; \n") for s, p, o in g: sn = node(s) if p == rdflib.RDFS.label: continue if isinstance(o, (rdflib.URIRef, rdflib.BNode)): on = node(o) opstr = "\t%s -> %s [ color=%s, label=< <font point-size='10' " + \ "color='#336633'>%s</font> > ] ;\n" stream.write(opstr % (sn, on, color(p), qname(p, g))) else: fields[sn].add((qname(p, g), formatliteral(o, g))) for u, n in list(nodes.items()): stream.write("# %s %s\n" % (u, n)) f = ["<tr><td align='left'>%s</td><td align='left'>%s</td></tr>" % x for x in sorted(fields[n])] opstr = "%s [ shape=none, color=%s label=< <table color='#666666'" + \ " cellborder='0' cellspacing='0' border='1'><tr>" + \ "<td colspan='2' bgcolor='grey'><B>%s</B></td></tr><tr>" + \ "<td href='%s' bgcolor='#eeeeee' colspan='2'>" + \ "<font point-size='10' color='#6666ff'>%s</font></td>" + \ "</tr>%s</table> > ] \n" stream.write(opstr % (n, NODECOLOR, label(u, g), u, u, "".join(f))) stream.write("}\n") def _help(): sys.stderr.write(""" rdf2dot.py [-f <format>] files... Read RDF files given on STDOUT, writes a graph of the RDFS schema in DOT language to stdout -f specifies parser to use, if not given, """) def main(): rdflib.extras.cmdlineutils.main(rdf2dot, _help) if __name__ == '__main__': main()