Mercurial > repos > shellac > guppy_basecaller
view env/lib/python3.7/site-packages/ruamel/yaml/reader.py @ 4:79f47841a781 draft
"planemo upload commit 2a0fe2cc28b09e101d37293e53e82f61762262ec"
author | shellac |
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date | Thu, 14 May 2020 16:47:39 -0400 |
parents | 26e78fe6e8c4 |
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# coding: utf-8 from __future__ import absolute_import # This module contains abstractions for the input stream. You don't have to # looks further, there are no pretty code. # # We define two classes here. # # Mark(source, line, column) # It's just a record and its only use is producing nice error messages. # Parser does not use it for any other purposes. # # Reader(source, data) # Reader determines the encoding of `data` and converts it to unicode. # Reader provides the following methods and attributes: # reader.peek(length=1) - return the next `length` characters # reader.forward(length=1) - move the current position to `length` # characters. # reader.index - the number of the current character. # reader.line, stream.column - the line and the column of the current # character. import codecs from ruamel.yaml.error import YAMLError, FileMark, StringMark, YAMLStreamError from ruamel.yaml.compat import text_type, binary_type, PY3, UNICODE_SIZE from ruamel.yaml.util import RegExp if False: # MYPY from typing import Any, Dict, Optional, List, Union, Text, Tuple, Optional # NOQA # from ruamel.yaml.compat import StreamTextType # NOQA __all__ = ['Reader', 'ReaderError'] class ReaderError(YAMLError): def __init__(self, name, position, character, encoding, reason): # type: (Any, Any, Any, Any, Any) -> None self.name = name self.character = character self.position = position self.encoding = encoding self.reason = reason def __str__(self): # type: () -> str if isinstance(self.character, binary_type): return "'%s' codec can't decode byte #x%02x: %s\n" ' in "%s", position %d' % ( self.encoding, ord(self.character), self.reason, self.name, self.position, ) else: return 'unacceptable character #x%04x: %s\n' ' in "%s", position %d' % ( self.character, self.reason, self.name, self.position, ) class Reader(object): # Reader: # - determines the data encoding and converts it to a unicode string, # - checks if characters are in allowed range, # - adds '\0' to the end. # Reader accepts # - a `str` object (PY2) / a `bytes` object (PY3), # - a `unicode` object (PY2) / a `str` object (PY3), # - a file-like object with its `read` method returning `str`, # - a file-like object with its `read` method returning `unicode`. # Yeah, it's ugly and slow. def __init__(self, stream, loader=None): # type: (Any, Any) -> None self.loader = loader if self.loader is not None and getattr(self.loader, '_reader', None) is None: self.loader._reader = self self.reset_reader() self.stream = stream # type: Any # as .read is called def reset_reader(self): # type: () -> None self.name = None # type: Any self.stream_pointer = 0 self.eof = True self.buffer = "" self.pointer = 0 self.raw_buffer = None # type: Any self.raw_decode = None self.encoding = None # type: Optional[Text] self.index = 0 self.line = 0 self.column = 0 @property def stream(self): # type: () -> Any try: return self._stream except AttributeError: raise YAMLStreamError('input stream needs to specified') @stream.setter def stream(self, val): # type: (Any) -> None if val is None: return self._stream = None if isinstance(val, text_type): self.name = '<unicode string>' self.check_printable(val) self.buffer = val + u'\0' # type: ignore elif isinstance(val, binary_type): self.name = '<byte string>' self.raw_buffer = val self.determine_encoding() else: if not hasattr(val, 'read'): raise YAMLStreamError('stream argument needs to have a read() method') self._stream = val self.name = getattr(self.stream, 'name', '<file>') self.eof = False self.raw_buffer = None self.determine_encoding() def peek(self, index=0): # type: (int) -> Text try: return self.buffer[self.pointer + index] except IndexError: self.update(index + 1) return self.buffer[self.pointer + index] def prefix(self, length=1): # type: (int) -> Any if self.pointer + length >= len(self.buffer): self.update(length) return self.buffer[self.pointer : self.pointer + length] def forward_1_1(self, length=1): # type: (int) -> None if self.pointer + length + 1 >= len(self.buffer): self.update(length + 1) while length != 0: ch = self.buffer[self.pointer] self.pointer += 1 self.index += 1 if ch in u'\n\x85\u2028\u2029' or ( ch == u'\r' and self.buffer[self.pointer] != u'\n' ): self.line += 1 self.column = 0 elif ch != u'\uFEFF': self.column += 1 length -= 1 def forward(self, length=1): # type: (int) -> None if self.pointer + length + 1 >= len(self.buffer): self.update(length + 1) while length != 0: ch = self.buffer[self.pointer] self.pointer += 1 self.index += 1 if ch == u'\n' or (ch == u'\r' and self.buffer[self.pointer] != u'\n'): self.line += 1 self.column = 0 elif ch != u'\uFEFF': self.column += 1 length -= 1 def get_mark(self): # type: () -> Any if self.stream is None: return StringMark( self.name, self.index, self.line, self.column, self.buffer, self.pointer ) else: return FileMark(self.name, self.index, self.line, self.column) def determine_encoding(self): # type: () -> None while not self.eof and (self.raw_buffer is None or len(self.raw_buffer) < 2): self.update_raw() if isinstance(self.raw_buffer, binary_type): if self.raw_buffer.startswith(codecs.BOM_UTF16_LE): self.raw_decode = codecs.utf_16_le_decode # type: ignore self.encoding = 'utf-16-le' elif self.raw_buffer.startswith(codecs.BOM_UTF16_BE): self.raw_decode = codecs.utf_16_be_decode # type: ignore self.encoding = 'utf-16-be' else: self.raw_decode = codecs.utf_8_decode # type: ignore self.encoding = 'utf-8' self.update(1) if UNICODE_SIZE == 2: NON_PRINTABLE = RegExp( u'[^\x09\x0A\x0D\x20-\x7E\x85' u'\xA0-\uD7FF' u'\uE000-\uFFFD' u']' ) else: NON_PRINTABLE = RegExp( u'[^\x09\x0A\x0D\x20-\x7E\x85' u'\xA0-\uD7FF' u'\uE000-\uFFFD' u'\U00010000-\U0010FFFF' u']' ) _printable_ascii = ('\x09\x0A\x0D' + "".join(map(chr, range(0x20, 0x7F)))).encode('ascii') @classmethod def _get_non_printable_ascii(cls, data): # type: ignore # type: (Text, bytes) -> Optional[Tuple[int, Text]] ascii_bytes = data.encode('ascii') non_printables = ascii_bytes.translate(None, cls._printable_ascii) # type: ignore if not non_printables: return None non_printable = non_printables[:1] return ascii_bytes.index(non_printable), non_printable.decode('ascii') @classmethod def _get_non_printable_regex(cls, data): # type: (Text) -> Optional[Tuple[int, Text]] match = cls.NON_PRINTABLE.search(data) if not bool(match): return None return match.start(), match.group() @classmethod def _get_non_printable(cls, data): # type: (Text) -> Optional[Tuple[int, Text]] try: return cls._get_non_printable_ascii(data) # type: ignore except UnicodeEncodeError: return cls._get_non_printable_regex(data) def check_printable(self, data): # type: (Any) -> None non_printable_match = self._get_non_printable(data) if non_printable_match is not None: start, character = non_printable_match position = self.index + (len(self.buffer) - self.pointer) + start raise ReaderError( self.name, position, ord(character), 'unicode', 'special characters are not allowed', ) def update(self, length): # type: (int) -> None if self.raw_buffer is None: return self.buffer = self.buffer[self.pointer :] self.pointer = 0 while len(self.buffer) < length: if not self.eof: self.update_raw() if self.raw_decode is not None: try: data, converted = self.raw_decode(self.raw_buffer, 'strict', self.eof) except UnicodeDecodeError as exc: if PY3: character = self.raw_buffer[exc.start] else: character = exc.object[exc.start] if self.stream is not None: position = self.stream_pointer - len(self.raw_buffer) + exc.start elif self.stream is not None: position = self.stream_pointer - len(self.raw_buffer) + exc.start else: position = exc.start raise ReaderError(self.name, position, character, exc.encoding, exc.reason) else: data = self.raw_buffer converted = len(data) self.check_printable(data) self.buffer += data self.raw_buffer = self.raw_buffer[converted:] if self.eof: self.buffer += '\0' self.raw_buffer = None break def update_raw(self, size=None): # type: (Optional[int]) -> None if size is None: size = 4096 if PY3 else 1024 data = self.stream.read(size) if self.raw_buffer is None: self.raw_buffer = data else: self.raw_buffer += data self.stream_pointer += len(data) if not data: self.eof = True # try: # import psyco # psyco.bind(Reader) # except ImportError: # pass