Mercurial > repos > shellac > sam_consensus_v3
annotate env/lib/python3.9/site-packages/cwltool/cwlNodeEngineWithContext.js @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
| author | shellac | 
|---|---|
| date | Mon, 22 Mar 2021 18:12:50 +0000 | 
| parents | |
| children | 
| rev | line source | 
|---|---|
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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changeset
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1 "use strict"; | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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2 process.stdin.setEncoding("utf8"); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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changeset
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3 var incoming = ""; | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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4 var firstInput = true; | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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5 var context = {}; | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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6 | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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7 process.stdin.on("data", function(chunk) { | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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8 incoming += chunk; | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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9 var i = incoming.indexOf("\n"); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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10 while (i > -1) { | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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11 try{ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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12 var input = incoming.substr(0, i); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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13 incoming = incoming.substr(i+1); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
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14 var fn = JSON.parse(input); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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15 if(firstInput){ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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16 context = require("vm").runInNewContext(fn, {}); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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17 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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18 else{ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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19 process.stdout.write(JSON.stringify(require("vm").runInNewContext(fn, context)) + "\n"); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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20 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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21 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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22 catch(e){ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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23 console.error(e); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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24 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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25 if(firstInput){ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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26 firstInput = false; | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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27 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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28 else{ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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29 /*strings to indicate the process has finished*/ | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
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30 console.log("r1cepzbhUTxtykz5XTC4"); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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31 console.error("r1cepzbhUTxtykz5XTC4"); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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32 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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33 | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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34 i = incoming.indexOf("\n"); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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35 } | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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36 }); | 
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4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
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37 process.stdin.on("end", process.exit); | 
