Mercurial > repos > shellac > sam_consensus_v3

annotate env/lib/python3.9/site-packages/cwltool/extensions-v1.1.yml @ 0:4f3585e2f14b draft default tip

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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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1 $base: http://commonwl.org/cwltool#
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2 $namespaces:
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3 cwl: "https://w3id.org/cwl/cwl#"
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4 $graph:
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5 - $import: https://w3id.org/cwl/CommonWorkflowLanguage.yml
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6
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7 - name: Secrets
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8 type: record
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9 inVocab: false
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10 extends: cwl:ProcessRequirement
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11 fields:
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12 class:
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13 type: string
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14 doc: "Always 'Secrets'"
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15 jsonldPredicate:
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16 "_id": "@type"
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17 "_type": "@vocab"
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18 secrets:
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19 type: string[]
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20 doc: |
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21 List one or more input parameters that are sensitive (such as passwords)
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22 which will be deliberately obscured from logging.
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23 jsonldPredicate:
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24 "_type": "@id"
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25 refScope: 0
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26
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27
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28 - name: ProcessGenerator
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29 type: record
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30 inVocab: true
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31 extends: cwl:Process
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32 documentRoot: true
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33 fields:
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34 - name: class
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35 jsonldPredicate:
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36 "_id": "@type"
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37 "_type": "@vocab"
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38 type: string
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39 - name: run
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40 type: [string, cwl:Process]
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41 jsonldPredicate:
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42 _id: "cwl:run"
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43 _type: "@id"
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44 subscope: run
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45 doc: |
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46 Specifies the process to run.
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47
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48 - name: MPIRequirement
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49 type: record
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50 inVocab: false
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51 extends: cwl:ProcessRequirement
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52 doc: |
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53 Indicates that a process requires an MPI runtime.
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54 fields:
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55 - name: class
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56 type: string
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57 doc: "Always 'MPIRequirement'"
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58 jsonldPredicate:
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59 "_id": "@type"
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60 "_type": "@vocab"
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61 - name: processes
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62 type: [int, string]
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63 doc: |
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64 The number of MPI processes to start. If you give a string,
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65 this will be evaluated as a CWL Expression and it must
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66 evaluate to an integer.