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annotate env/lib/python3.9/site-packages/rdflib/extras/infixowl.py @ 0:4f3585e2f14b draft default tip

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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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1 #!/usr/bin/env python
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2 # -*- coding: utf-8 -*-
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3 from __future__ import absolute_import
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4 from __future__ import division
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5 from __future__ import print_function
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6
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7 from six import PY3
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8
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9
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10 __doc__ = """
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11 RDFLib Python binding for OWL Abstract Syntax
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12
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13 see: http://www.w3.org/TR/owl-semantics/syntax.html
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14 http://owl-workshop.man.ac.uk/acceptedLong/submission_9.pdf
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15
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16 3.2.3 Axioms for complete classes without using owl:equivalentClass
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17
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18 Named class description of type 2 (with owl:oneOf) or type 4-6
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19 (with owl:intersectionOf, owl:unionOf or owl:complementOf
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21
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22 Uses Manchester Syntax for __repr__
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23
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24 >>> exNs = Namespace('http://example.com/')
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25 >>> namespace_manager = NamespaceManager(Graph())
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26 >>> namespace_manager.bind('ex', exNs, override=False)
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27 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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28 >>> g = Graph()
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29 >>> g.namespace_manager = namespace_manager
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30
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31 Now we have an empty graph, we can construct OWL classes in it
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32 using the Python classes defined in this module
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33
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34 >>> a = Class(exNs.Opera, graph=g)
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35
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36 Now we can assert rdfs:subClassOf and owl:equivalentClass relationships
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37 (in the underlying graph) with other classes using the 'subClassOf'
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38 and 'equivalentClass' descriptors which can be set to a list
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39 of objects for the corresponding predicates.
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40
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41 >>> a.subClassOf = [exNs.MusicalWork]
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42
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43 We can then access the rdfs:subClassOf relationships
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44
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45 >>> print(list(a.subClassOf))
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46 [Class: ex:MusicalWork ]
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47
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48 This can also be used against already populated graphs:
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49
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50 >>> owlGraph = Graph().parse(OWL_NS) #doctest: +SKIP
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51 >>> namespace_manager.bind('owl', OWL_NS, override=False) #doctest: +SKIP
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52 >>> owlGraph.namespace_manager = namespace_manager #doctest: +SKIP
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53 >>> list(Class(OWL_NS.Class, graph=owlGraph).subClassOf) #doctest: +SKIP
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54 [Class: rdfs:Class ]
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55
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56 Operators are also available. For instance we can add ex:Opera to the extension
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57 of the ex:CreativeWork class via the '+=' operator
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58
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59 >>> a #doctest: +SKIP
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60 Class: ex:Opera SubClassOf: ex:MusicalWork
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61 >>> b = Class(exNs.CreativeWork, graph=g)
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62 >>> b += a
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63 >>> print(sorted(a.subClassOf, key=lambda c:c.identifier)) #doctest: +SKIP
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64 [Class: ex:CreativeWork , Class: ex:MusicalWork ]
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65
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66 And we can then remove it from the extension as well
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67
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68 >>> b -= a
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69 >>> a #doctest: +SKIP
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70 Class: ex:Opera SubClassOf: ex:MusicalWork
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71
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72 Boolean class constructions can also be created with Python operators.
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73 For example, The | operator can be used to construct a class consisting of a
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74 owl:unionOf the operands:
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75
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76 >>> c = a | b | Class(exNs.Work, graph=g)
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77 >>> c #doctest: +SKIP
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78 ( ex:Opera OR ex:CreativeWork OR ex:Work )
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79
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80 Boolean class expressions can also be operated as lists (using python list
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81 operators)
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82
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83 >>> del c[c.index(Class(exNs.Work, graph=g))]
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84 >>> c #doctest: +SKIP
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85 ( ex:Opera OR ex:CreativeWork )
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86
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87 The '&' operator can be used to construct class intersection:
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88
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89 >>> woman = Class(exNs.Female, graph=g) & Class(exNs.Human, graph=g)
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90 >>> woman.identifier = exNs.Woman
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91 >>> woman #doctest: +SKIP
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92 ( ex:Female AND ex:Human )
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93 >>> len(woman)
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94 2
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95
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96 Enumerated classes can also be manipulated
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97
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98 >>> contList = [Class(exNs.Africa, graph=g), Class(exNs.NorthAmerica, graph=g)]
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99 >>> EnumeratedClass(members=contList, graph=g) #doctest: +SKIP
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100 { ex:Africa ex:NorthAmerica }
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101
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102 owl:Restrictions can also be instantiated:
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103
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104 >>> Restriction(exNs.hasParent, graph=g, allValuesFrom=exNs.Human) #doctest: +SKIP
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105 ( ex:hasParent ONLY ex:Human )
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106
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107 Restrictions can also be created using Manchester OWL syntax in 'colloquial'
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108 Python
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109 >>> exNs.hasParent | some | Class(exNs.Physician, graph=g) #doctest: +SKIP
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110 ( ex:hasParent SOME ex:Physician )
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111
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112 >>> Property(exNs.hasParent,graph=g) | max | Literal(1) #doctest: +SKIP
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113 ( ex:hasParent MAX 1 )
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114
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115 >>> print(g.serialize(format='pretty-xml')) #doctest: +SKIP
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116
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117 """
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118
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119 import itertools
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120
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121 from rdflib import (
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122 BNode,
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123 Literal,
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124 Namespace,
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125 RDF,
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126 RDFS,
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127 URIRef,
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128 Variable
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129 )
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130 from rdflib.graph import Graph
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131 from rdflib.collection import Collection
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132 from rdflib.namespace import XSD as _XSD_NS
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133 from rdflib.namespace import NamespaceManager
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134 from rdflib.term import Identifier
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135 from rdflib.util import first
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136
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137 import logging
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138 logger = logging.getLogger(__name__)
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139
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140
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141 """
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142 From: http://aspn.activestate.com/ASPN/Cookbook/Python/Recipe/384122
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143
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144 Python has the wonderful "in" operator and it would be nice to have additional
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145 infix operator like this. This recipe shows how (almost) arbitrary infix
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146 operators can be defined.
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147
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148 """
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149
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150 __all__ = [
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151 'OWL_NS',
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152 'nsBinds',
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153 'ACE_NS',
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154 'CLASS_RELATIONS',
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155 'some',
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156 'only',
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157 'max',
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158 'min',
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159 'exactly',
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160 'value',
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161 'PropertyAbstractSyntax',
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162 'AllClasses',
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163 'AllDifferent',
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164 'AllProperties',
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165 'AnnotatableTerms',
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166 'BooleanClass',
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167 'Callable',
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168 'CastClass',
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169 'Class',
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170 'ClassNamespaceFactory',
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171 'classOrIdentifier',
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172 'classOrTerm',
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173 'CommonNSBindings',
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174 'ComponentTerms',
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175 'DeepClassClear',
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176 'EnumeratedClass',
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177 'generateQName',
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178 'GetIdentifiedClasses',
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179 'Individual',
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180 'MalformedClass',
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181 'manchesterSyntax',
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182 'Ontology',
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183 'OWLRDFListProxy',
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184 'Property',
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185 'propertyOrIdentifier',
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186 'Restriction',
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187 'termDeletionDecorator',
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188 ]
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189
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190 # definition of an Infix operator class
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191 # this recipe also works in jython
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192 # calling sequence for the infix is either:
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193 # x |op| y
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194 # or:
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195 # x <<op>> y
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196
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197
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198 class Infix:
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199 def __init__(self, function):
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200 self.function = function
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201
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202 def __ror__(self, other):
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203 return Infix(lambda x, self=self, other=other: self.function(other, x))
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204
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205 def __or__(self, other):
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206 return self.function(other)
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207
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208 def __rlshift__(self, other):
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209 return Infix(lambda x, self=self, other=other: self.function(other, x))
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210
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211 def __rshift__(self, other):
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212 return self.function(other)
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213
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214 def __call__(self, value1, value2):
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215 return self.function(value1, value2)
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216
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217
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218 OWL_NS = Namespace("http://www.w3.org/2002/07/owl#")
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219
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220 nsBinds = {
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221 'skos': 'http://www.w3.org/2004/02/skos/core#',
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222 'rdf': RDF,
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223 'rdfs': RDFS,
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224 'owl': OWL_NS,
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225 'list': URIRef('http://www.w3.org/2000/10/swap/list#'),
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226 'dc': "http://purl.org/dc/elements/1.1/",
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227 }
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228
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229
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230 def generateQName(graph, uri):
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231 prefix, uri, localName = graph.compute_qname(classOrIdentifier(uri))
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232 return u':'.join([prefix, localName])
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233
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234
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235 def classOrTerm(thing):
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236 if isinstance(thing, Class):
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237 return thing.identifier
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238 else:
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239 assert isinstance(thing, (URIRef, BNode, Literal))
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240 return thing
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241
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242
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243 def classOrIdentifier(thing):
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244 if isinstance(thing, (Property, Class)):
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245 return thing.identifier
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246 else:
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247 assert isinstance(thing, (URIRef, BNode)), \
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248 "Expecting a Class, Property, URIRef, or BNode.. not a %s" % thing
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249 return thing
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250
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251
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252 def propertyOrIdentifier(thing):
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253 if isinstance(thing, Property):
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254 return thing.identifier
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255 else:
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256 assert isinstance(thing, URIRef)
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257 return thing
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258
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259
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260 def manchesterSyntax(thing, store, boolean=None, transientList=False):
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261 """
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262 Core serialization
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263 """
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264 assert thing is not None
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265 if boolean:
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266 if transientList:
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267 liveChildren = iter(thing)
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268 children = [manchesterSyntax(child, store) for child in thing]
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269 else:
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270 liveChildren = iter(Collection(store, thing))
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271 children = [manchesterSyntax(
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272 child, store) for child in Collection(store, thing)]
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273 if boolean == OWL_NS.intersectionOf:
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274 childList = []
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275 named = []
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276 for child in liveChildren:
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277 if isinstance(child, URIRef):
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278 named.append(child)
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279 else:
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280 childList.append(child)
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281 if named:
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282 def castToQName(x):
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283 prefix, uri, localName = store.compute_qname(x)
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284 return ':'.join([prefix, localName])
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285
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286 if len(named) > 1:
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287 prefix = u'( ' + u' AND '.join(map(
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288 castToQName, named)) + u' )'
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289 else:
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290 prefix = manchesterSyntax(named[0], store)
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291 if childList:
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292 return str(prefix) + u' THAT ' + u' AND '.join(
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293 [str(manchesterSyntax(x, store)) for x in childList])
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parents:
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294 else:
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295 return prefix
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296 else:
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297 return u'( ' + u' AND '.join(
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298 [str(c) for c in children]) + u' )'
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299 elif boolean == OWL_NS.unionOf:
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300 return u'( ' + u' OR '.join([str(c) for c in children]) + ' )'
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301 elif boolean == OWL_NS.oneOf:
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302 return u'{ ' + u' '.join([str(c) for c in children]) + ' }'
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303 else:
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304 assert boolean == OWL_NS.complementOf
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305 elif OWL_NS.Restriction in store.objects(
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306 subject=thing, predicate=RDF.type):
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307 prop = list(
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308 store.objects(subject=thing, predicate=OWL_NS.onProperty))[0]
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309 prefix, uri, localName = store.compute_qname(prop)
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310 propString = u':'.join([prefix, localName])
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311 label = first(store.objects(subject=prop, predicate=RDFS.label))
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312 if label:
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313 propString = "'%s'" % label
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314 for onlyClass in store.objects(
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315 subject=thing, predicate=OWL_NS.allValuesFrom):
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316 return u'( %s ONLY %s )' % (
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317 propString, manchesterSyntax(onlyClass, store))
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318 for val in store.objects(subject=thing, predicate=OWL_NS.hasValue):
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319 return u'( %s VALUE %s )' % (
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320 propString,
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321 manchesterSyntax(val, store))
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322 for someClass in store.objects(
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323 subject=thing, predicate=OWL_NS.someValuesFrom):
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324 return u'( %s SOME %s )' % (
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325 propString, manchesterSyntax(someClass, store))
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326 cardLookup = {OWL_NS.maxCardinality: 'MAX',
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327 OWL_NS.minCardinality: 'MIN',
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328 OWL_NS.cardinality: 'EQUALS'}
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diff changeset
329 for s, p, o in store.triples_choices(
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parents:
diff changeset
330 (thing, list(cardLookup.keys()), None)):
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diff changeset
331 return u'( %s %s %s )' % (
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parents:
diff changeset
332 propString, cardLookup[p], o)
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diff changeset
333 compl = list(store.objects(subject=thing, predicate=OWL_NS.complementOf))
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diff changeset
334 if compl:
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335 return '( NOT %s )' % (manchesterSyntax(compl[0], store))
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parents:
diff changeset
336 else:
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diff changeset
337 prolog = '\n'.join(
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338 ["PREFIX %s: <%s>" % (k, nsBinds[k]) for k in nsBinds])
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339 qstr = \
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340 prolog + \
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341 "\nSELECT ?p ?bool WHERE {?class a owl:Class; ?p ?bool ." + \
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342 "?bool rdf:first ?foo }"
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343 initb = {Variable("?class"): thing}
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344 for boolProp, col in \
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345 store.query(qstr, processor="sparql", initBindings=initb):
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346 if not isinstance(thing, URIRef):
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347 return manchesterSyntax(col, store, boolean=boolProp)
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348 try:
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349 prefix, uri, localName = store.compute_qname(thing)
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350 qname = u':'.join([prefix, localName])
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351 except Exception:
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352 if isinstance(thing, BNode):
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diff changeset
353 return thing.n3()
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diff changeset
354 return u"<" + thing + ">"
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diff changeset
355 logger.debug(list(store.objects(subject=thing, predicate=RDF.type)))
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parents:
diff changeset
356 raise
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diff changeset
357 return '[]' # +thing._id.encode('utf-8')+'</em>'
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parents:
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358 label = first(Class(thing, graph=store).label)
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parents:
diff changeset
359 if label:
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parents:
diff changeset
360 return label
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parents:
diff changeset
361 else:
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parents:
diff changeset
362 return qname
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parents:
diff changeset
363
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parents:
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364
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365 def GetIdentifiedClasses(graph):
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parents:
diff changeset
366 for c in graph.subjects(predicate=RDF.type, object=OWL_NS.Class):
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parents:
diff changeset
367 if isinstance(c, URIRef):
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parents:
diff changeset
368 yield Class(c)
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369
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diff changeset
370
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371 def termDeletionDecorator(prop):
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parents:
diff changeset
372 def someFunc(func):
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diff changeset
373 func.property = prop
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parents:
diff changeset
374 return func
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parents:
diff changeset
375 return someFunc
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parents:
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376
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parents:
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377
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378 class TermDeletionHelper:
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379 def __init__(self, prop):
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diff changeset
380 self.prop = prop
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parents:
diff changeset
381
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parents:
diff changeset
382 def __call__(self, f):
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parents:
diff changeset
383 def _remover(inst):
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parents:
diff changeset
384 inst.graph.remove((inst.identifier, self.prop, None))
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parents:
diff changeset
385 return _remover
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shellac
parents:
diff changeset
386
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shellac
parents:
diff changeset
387
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parents:
diff changeset
388 class Individual(object):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
389 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
390 A typed individual
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shellac
parents:
diff changeset
391 """
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parents:
diff changeset
392 factoryGraph = Graph()
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parents:
diff changeset
393
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parents:
diff changeset
394 def serialize(self, graph):
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parents:
diff changeset
395 for fact in self.factoryGraph.triples((self.identifier, None, None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
396 graph.add(fact)
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parents:
diff changeset
397
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parents:
diff changeset
398 def __init__(self, identifier=None, graph=None):
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shellac
parents:
diff changeset
399 self.__identifier = identifier is not None and identifier or BNode()
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parents:
diff changeset
400 if graph is None:
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parents:
diff changeset
401 self.graph = self.factoryGraph
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parents:
diff changeset
402 else:
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parents:
diff changeset
403 self.graph = graph
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parents:
diff changeset
404 self.qname = None
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parents:
diff changeset
405 if not isinstance(self.identifier, BNode):
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shellac
parents:
diff changeset
406 try:
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parents:
diff changeset
407 prefix, uri, localName = self.graph.compute_qname(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
408 self.identifier)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
409 self.qname = u':'.join([prefix, localName])
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shellac
parents:
diff changeset
410 except:
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parents:
diff changeset
411 pass
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shellac
parents:
diff changeset
412
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parents:
diff changeset
413 def clearInDegree(self):
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parents:
diff changeset
414 self.graph.remove((None, None, self.identifier))
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shellac
parents:
diff changeset
415
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parents:
diff changeset
416 def clearOutDegree(self):
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parents:
diff changeset
417 self.graph.remove((self.identifier, None, None))
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parents:
diff changeset
418
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parents:
diff changeset
419 def delete(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
420 self.clearInDegree()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
421 self.clearOutDegree()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
422
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parents:
diff changeset
423 def replace(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
424 for s, p, o in self.graph.triples((None, None, self.identifier)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
425 self.graph.add((s, p, classOrIdentifier(other)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
426 self.delete()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
427
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
428 def _get_type(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
429 for _t in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
430 subject=self.identifier, predicate=RDF.type):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
431 yield _t
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
432
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parents:
diff changeset
433 def _set_type(self, kind):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
434 if not kind:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
435 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
436 if isinstance(kind, (Individual, Identifier)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
437 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
438 (self.identifier, RDF.type, classOrIdentifier(kind)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
439 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
440 for c in kind:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
441 assert isinstance(c, (Individual, Identifier))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
442 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
443 (self.identifier, RDF.type, classOrIdentifier(c)))
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shellac
parents:
diff changeset
444
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
445 @TermDeletionHelper(RDF.type)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
446 def _delete_type(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
447 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
448 >>> g = Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
449 >>> b=Individual(OWL_NS.Restriction,g)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
450 >>> b.type = RDF.Resource
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
451 >>> len(list(b.type))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
452 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
453 >>> del b.type
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
454 >>> len(list(b.type))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
455 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
456 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
457 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
458
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
459 type = property(_get_type, _set_type, _delete_type)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
460
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
461 def _get_identifier(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
462 return self.__identifier
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
463
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
464 def _set_identifier(self, i):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
465 assert i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
466 if i != self.__identifier:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
467 oldStmtsOut = [(p, o) for s, p, o in self.graph.triples(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
468 (self.__identifier, None, None))]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
469 oldStmtsIn = [(s, p) for s, p, o in self.graph.triples(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
470 (None, None, self.__identifier))]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
471 for p1, o1 in oldStmtsOut:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
472 self.graph.remove((self.__identifier, p1, o1))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
473 for s1, p1 in oldStmtsIn:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
474 self.graph.remove((s1, p1, self.__identifier))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
475 self.__identifier = i
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
476 self.graph.addN(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
477 [(i, p1, o1, self.graph) for p1, o1 in oldStmtsOut])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
478 self.graph.addN([(s1, p1, i, self.graph) for s1, p1 in oldStmtsIn])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
479 if not isinstance(i, BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
480 try:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
481 prefix, uri, localName = self.graph.compute_qname(i)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
482 self.qname = u':'.join([prefix, localName])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
483 except:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
484 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
485
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
486 identifier = property(_get_identifier, _set_identifier)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
487
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
488 def _get_sameAs(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
489 for _t in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
490 subject=self.identifier, predicate=OWL_NS.sameAs):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
491 yield _t
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
492
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
493 def _set_sameAs(self, term):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
494 # if not kind:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
495 # return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
496 if isinstance(term, (Individual, Identifier)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
497 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
498 (self.identifier, OWL_NS.sameAs, classOrIdentifier(term)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
499 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
500 for c in term:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
501 assert isinstance(c, (Individual, Identifier))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
502 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
503 (self.identifier, OWL_NS.sameAs, classOrIdentifier(c)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
504
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
505 @TermDeletionHelper(OWL_NS.sameAs)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
506 def _delete_sameAs(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
507 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
508
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
509 sameAs = property(_get_sameAs, _set_sameAs, _delete_sameAs)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
510
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
511
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
512 ACE_NS = Namespace('http://attempto.ifi.uzh.ch/ace_lexicon#')
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
513
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
514
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
515 class AnnotatableTerms(Individual):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
516 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
517 Terms in an OWL ontology with rdfs:label and rdfs:comment
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
518 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
519
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
520 def __init__(self,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
521 identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
522 graph=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
523 nameAnnotation=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
524 nameIsLabel=False):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
525 super(AnnotatableTerms, self).__init__(identifier, graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
526 if nameAnnotation:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
527 self.setupACEAnnotations()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
528 self.PN_sgProp.extent = [(self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
529 self.handleAnnotation(nameAnnotation))]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
530 if nameIsLabel:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
531 self.label = [nameAnnotation]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
532
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
533 def handleAnnotation(self, val):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
534 return val if isinstance(val, Literal) else Literal(val)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
535
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
536 def setupACEAnnotations(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
537 self.graph.bind('ace', ACE_NS, override=False)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
538
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
539 # PN_sg singular form of a proper name ()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
540 self.PN_sgProp = Property(ACE_NS.PN_sg,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
541 baseType=OWL_NS.AnnotationProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
542 graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
543
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
544 # CN_sg singular form of a common noun
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
545 self.CN_sgProp = Property(ACE_NS.CN_sg,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
546 baseType=OWL_NS.AnnotationProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
547 graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
548
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
549 # CN_pl plural form of a common noun
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
550 self.CN_plProp = Property(ACE_NS.CN_pl,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
551 baseType=OWL_NS.AnnotationProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
552 graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
553
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
554 # singular form of a transitive verb
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
555 self.TV_sgProp = Property(ACE_NS.TV_sg,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
556 baseType=OWL_NS.AnnotationProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
557 graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
558
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
559 # plural form of a transitive verb
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
560 self.TV_plProp = Property(ACE_NS.TV_pl,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
561 baseType=OWL_NS.AnnotationProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
562 graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
563
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
564 # past participle form a transitive verb
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
565 self.TV_vbgProp = Property(ACE_NS.TV_vbg,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
566 baseType=OWL_NS.AnnotationProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
567 graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
568
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
569 def _get_comment(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
570 for comment in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
571 subject=self.identifier, predicate=RDFS.comment):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
572 yield comment
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
573
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
574 def _set_comment(self, comment):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
575 if not comment:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
576 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
577 if isinstance(comment, Identifier):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
578 self.graph.add((self.identifier, RDFS.comment, comment))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
579 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
580 for c in comment:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
581 self.graph.add((self.identifier, RDFS.comment, c))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
582
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
583 @TermDeletionHelper(RDFS.comment)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
584 def _del_comment(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
585 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
586
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
587 comment = property(_get_comment, _set_comment, _del_comment)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
588
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
589 def _get_seeAlso(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
590 for sA in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
591 subject=self.identifier, predicate=RDFS.seeAlso):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
592 yield sA
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
593
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
594 def _set_seeAlso(self, seeAlsos):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
595 if not seeAlsos:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
596 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
597 for s in seeAlsos:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
598 self.graph.add((self.identifier, RDFS.seeAlso, s))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
599
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
600 @TermDeletionHelper(RDFS.seeAlso)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
601 def _del_seeAlso(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
602 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
603 seeAlso = property(_get_seeAlso, _set_seeAlso, _del_seeAlso)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
604
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
605 def _get_label(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
606 for label in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
607 subject=self.identifier, predicate=RDFS.label):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
608 yield label
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
609
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
610 def _set_label(self, label):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
611 if not label:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
612 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
613 if isinstance(label, Identifier):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
614 self.graph.add((self.identifier, RDFS.label, label))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
615 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
616 for l in label:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
617 self.graph.add((self.identifier, RDFS.label, l))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
618
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
619 @TermDeletionHelper(RDFS.label)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
620 def _delete_label(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
621 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
622 >>> g=Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
623 >>> b=Individual(OWL_NS.Restriction,g)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
624 >>> b.label = Literal('boo')
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
625 >>> len(list(b.label))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
626 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
627 >>> del b.label
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
628 >>> len(list(b.label))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
629 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
630 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
631 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
632
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
633 label = property(_get_label, _set_label, _delete_label)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
634
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
635
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
636 class Ontology(AnnotatableTerms):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
637 """ The owl ontology metadata"""
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
638
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
639 def __init__(self,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
640 identifier=None, imports=None, comment=None, graph=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
641 super(Ontology, self).__init__(identifier, graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
642 self.imports = imports and imports or []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
643 self.comment = comment and comment or []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
644 if (self.identifier, RDF.type, OWL_NS.Ontology) not in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
645 self.graph.add((self.identifier, RDF.type, OWL_NS.Ontology))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
646
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
647 def setVersion(self, version):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
648 self.graph.set((self.identifier, OWL_NS.versionInfo, version))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
649
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
650 def _get_imports(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
651 for owl in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
652 subject=self.identifier, predicate=OWL_NS['imports']):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
653 yield owl
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
654
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
655 def _set_imports(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
656 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
657 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
658 for o in other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
659 self.graph.add((self.identifier, OWL_NS['imports'], o))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
660
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
661 @TermDeletionHelper(OWL_NS['imports'])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
662 def _del_imports(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
663 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
664
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
665 imports = property(_get_imports, _set_imports, _del_imports)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
666
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
667
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
668 def AllClasses(graph):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
669 prevClasses = set()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
670 for c in graph.subjects(predicate=RDF.type, object=OWL_NS.Class):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
671 if c not in prevClasses:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
672 prevClasses.add(c)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
673 yield Class(c)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
674
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
675
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
676 def AllProperties(graph):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
677 prevProps = set()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
678 for s, p, o in graph.triples_choices(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
679 (None, RDF.type, [OWL_NS.SymmetricProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
680 OWL_NS.FunctionalProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
681 OWL_NS.InverseFunctionalProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
682 OWL_NS.TransitiveProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
683 OWL_NS.DatatypeProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
684 OWL_NS.ObjectProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
685 OWL_NS.AnnotationProperty])):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
686 if o in [OWL_NS.SymmetricProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
687 OWL_NS.InverseFunctionalProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
688 OWL_NS.TransitiveProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
689 OWL_NS.ObjectProperty]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
690 bType = OWL_NS.ObjectProperty
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
691 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
692 bType = OWL_NS.DatatypeProperty
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
693 if s not in prevProps:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
694 prevProps.add(s)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
695 yield Property(s,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
696 graph=graph,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
697 baseType=bType)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
698
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
699
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
700 class ClassNamespaceFactory(Namespace):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
701 def term(self, name):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
702 return Class(URIRef(self + name))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
703
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
704 def __getitem__(self, key, default=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
705 return self.term(key)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
706
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
707 def __getattr__(self, name):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
708 if name.startswith("__"): # ignore any special Python names!
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
709 raise AttributeError
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
710 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
711 return self.term(name)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
712
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
713
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
714 CLASS_RELATIONS = set(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
715 OWL_NS.resourceProperties
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
716 ).difference([OWL_NS.onProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
717 OWL_NS.allValuesFrom,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
718 OWL_NS.hasValue,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
719 OWL_NS.someValuesFrom,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
720 OWL_NS.inverseOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
721 OWL_NS.imports,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
722 OWL_NS.versionInfo,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
723 OWL_NS.backwardCompatibleWith,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
724 OWL_NS.incompatibleWith,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
725 OWL_NS.unionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
726 OWL_NS.intersectionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
727 OWL_NS.oneOf])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
728
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
729
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
730 def ComponentTerms(cls):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
731 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
732 Takes a Class instance and returns a generator over the classes that
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
733 are involved in its definition, ignoring unnamed classes
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
734 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
735 if OWL_NS.Restriction in cls.type:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
736 try:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
737 cls = CastClass(cls, Individual.factoryGraph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
738 for s, p, innerClsId in cls.factoryGraph.triples_choices(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
739 (cls.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
740 [OWL_NS.allValuesFrom,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
741 OWL_NS.someValuesFrom],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
742 None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
743 innerCls = Class(innerClsId, skipOWLClassMembership=True)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
744 if isinstance(innerClsId, BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
745 for _c in ComponentTerms(innerCls):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
746 yield _c
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
747 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
748 yield innerCls
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
749 except:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
750 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
751 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
752 cls = CastClass(cls, Individual.factoryGraph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
753 if isinstance(cls, BooleanClass):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
754 for _cls in cls:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
755 _cls = Class(_cls, skipOWLClassMembership=True)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
756 if isinstance(_cls.identifier, BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
757 for _c in ComponentTerms(_cls):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
758 yield _c
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
759 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
760 yield _cls
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
761 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
762 for innerCls in cls.subClassOf:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
763 if isinstance(innerCls.identifier, BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
764 for _c in ComponentTerms(innerCls):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
765 yield _c
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
766 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
767 yield innerCls
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
768 for s, p, o in cls.factoryGraph.triples_choices(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
769 (classOrIdentifier(cls),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
770 CLASS_RELATIONS,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
771 None)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
772 ):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
773 if isinstance(o, BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
774 for _c in ComponentTerms(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
775 CastClass(o, Individual.factoryGraph)):
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shellac
parents:
diff changeset
776 yield _c
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
777 else:
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shellac
parents:
diff changeset
778 yield innerCls
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
779
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
780
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
781 def DeepClassClear(classToPrune):
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shellac
parents:
diff changeset
782 """
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shellac
parents:
diff changeset
783 Recursively clear the given class, continuing
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
784 where any related class is an anonymous class
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shellac
parents:
diff changeset
785
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
786 >>> EX = Namespace('http://example.com/')
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shellac
parents:
diff changeset
787 >>> namespace_manager = NamespaceManager(Graph())
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shellac
parents:
diff changeset
788 >>> namespace_manager.bind('ex', EX, override=False)
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shellac
parents:
diff changeset
789 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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shellac
parents:
diff changeset
790 >>> g = Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
791 >>> g.namespace_manager = namespace_manager
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shellac
parents:
diff changeset
792 >>> Individual.factoryGraph = g
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shellac
parents:
diff changeset
793 >>> classB = Class(EX.B)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
794 >>> classC = Class(EX.C)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
795 >>> classD = Class(EX.D)
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shellac
parents:
diff changeset
796 >>> classE = Class(EX.E)
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shellac
parents:
diff changeset
797 >>> classF = Class(EX.F)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
798 >>> anonClass = EX.someProp | some | classD #doctest: +SKIP
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shellac
parents:
diff changeset
799 >>> classF += anonClass #doctest: +SKIP
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shellac
parents:
diff changeset
800 >>> list(anonClass.subClassOf) #doctest: +SKIP
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shellac
parents:
diff changeset
801 [Class: ex:F ]
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shellac
parents:
diff changeset
802 >>> classA = classE | classF | anonClass #doctest: +SKIP
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shellac
parents:
diff changeset
803 >>> classB += classA #doctest: +SKIP
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shellac
parents:
diff changeset
804 >>> classA.equivalentClass = [Class()] #doctest: +SKIP
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shellac
parents:
diff changeset
805 >>> classB.subClassOf = [EX.someProp | some | classC] #doctest: +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
806 >>> classA #doctest: +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
807 ( ex:E OR ex:F OR ( ex:someProp SOME ex:D ) )
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shellac
parents:
diff changeset
808 >>> DeepClassClear(classA) #doctest: +SKIP
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shellac
parents:
diff changeset
809 >>> classA #doctest: +SKIP
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shellac
parents:
diff changeset
810 ( )
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shellac
parents:
diff changeset
811 >>> list(anonClass.subClassOf) #doctest: +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
812 []
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shellac
parents:
diff changeset
813 >>> classB #doctest: +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
814 Class: ex:B SubClassOf: ( ex:someProp SOME ex:C )
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shellac
parents:
diff changeset
815
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shellac
parents:
diff changeset
816 >>> otherClass = classD | anonClass #doctest: +SKIP
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shellac
parents:
diff changeset
817 >>> otherClass #doctest: +SKIP
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shellac
parents:
diff changeset
818 ( ex:D OR ( ex:someProp SOME ex:D ) )
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shellac
parents:
diff changeset
819 >>> DeepClassClear(otherClass) #doctest: +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
820 >>> otherClass #doctest: +SKIP
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shellac
parents:
diff changeset
821 ( )
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parents:
diff changeset
822 >>> otherClass.delete() #doctest: +SKIP
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shellac
parents:
diff changeset
823 >>> list(g.triples((otherClass.identifier, None, None))) #doctest: +SKIP
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shellac
parents:
diff changeset
824 []
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shellac
parents:
diff changeset
825 """
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shellac
parents:
diff changeset
826 def deepClearIfBNode(_class):
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shellac
parents:
diff changeset
827 if isinstance(classOrIdentifier(_class), BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
828 DeepClassClear(_class)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
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parents:
diff changeset
829 classToPrune = CastClass(classToPrune, Individual.factoryGraph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
830 for c in classToPrune.subClassOf:
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shellac
parents:
diff changeset
831 deepClearIfBNode(c)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
832 classToPrune.graph.remove((classToPrune.identifier, RDFS.subClassOf, None))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
833 for c in classToPrune.equivalentClass:
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shellac
parents:
diff changeset
834 deepClearIfBNode(c)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
835 classToPrune.graph.remove(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
836 (classToPrune.identifier, OWL_NS.equivalentClass, None))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
837 inverseClass = classToPrune.complementOf
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
838 if inverseClass:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
839 classToPrune.graph.remove(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
840 (classToPrune.identifier, OWL_NS.complementOf, None))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
841 deepClearIfBNode(inverseClass)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
842 if isinstance(classToPrune, BooleanClass):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
843 for c in classToPrune:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
844 deepClearIfBNode(c)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
845 classToPrune.clear()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
846 classToPrune.graph.remove((classToPrune.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
847 classToPrune._operator,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
848 None))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
849
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
850
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
851 class MalformedClass(Exception):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
852 def __init__(self, msg):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
853 self.msg = msg
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
854
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
855 def __repr__(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
856 return self.msg
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
857
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
858
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
859 def CastClass(c, graph=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
860 graph = graph is None and c.factoryGraph or graph
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
861 for kind in graph.objects(subject=classOrIdentifier(c),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
862 predicate=RDF.type):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
863 if kind == OWL_NS.Restriction:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
864 kwArgs = {'identifier': classOrIdentifier(c),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
865 'graph': graph}
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
866 for s, p, o in graph.triples((classOrIdentifier(c),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
867 None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
868 None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
869 if p != RDF.type:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
870 if p == OWL_NS.onProperty:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
871 kwArgs['onProperty'] = o
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
872 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
873 if p not in Restriction.restrictionKinds:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
874 continue
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
875 kwArgs[str(p.split(OWL_NS)[-1])] = o
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
876 if not set([str(i.split(OWL_NS)[-1])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
877 for i in Restriction.restrictionKinds]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
878 ).intersection(kwArgs):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
879 raise MalformedClass("Malformed owl:Restriction")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
880 return Restriction(**kwArgs)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
881 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
882 for s, p, o in graph.triples_choices((classOrIdentifier(c),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
883 [OWL_NS.intersectionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
884 OWL_NS.unionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
885 OWL_NS.oneOf],
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
886 None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
887 if p == OWL_NS.oneOf:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
888 return EnumeratedClass(classOrIdentifier(c), graph=graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
889 else:
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shellac
parents:
diff changeset
890 return BooleanClass(
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shellac
parents:
diff changeset
891 classOrIdentifier(c), operator=p, graph=graph)
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shellac
parents:
diff changeset
892 # assert (classOrIdentifier(c),RDF.type,OWL_NS.Class) in graph
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shellac
parents:
diff changeset
893 return Class(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
894 classOrIdentifier(c), graph=graph, skipOWLClassMembership=True)
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shellac
parents:
diff changeset
895
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shellac
parents:
diff changeset
896
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shellac
parents:
diff changeset
897 class Class(AnnotatableTerms):
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shellac
parents:
diff changeset
898 """
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shellac
parents:
diff changeset
899 'General form' for classes:
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shellac
parents:
diff changeset
900
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shellac
parents:
diff changeset
901 The Manchester Syntax (supported in Protege) is used as the basis for the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
902 form of this class
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shellac
parents:
diff changeset
903
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shellac
parents:
diff changeset
904 See: http://owl-workshop.man.ac.uk/acceptedLong/submission_9.pdf:
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shellac
parents:
diff changeset
905
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shellac
parents:
diff changeset
906 [Annotation]
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shellac
parents:
diff changeset
907 ‘Class:’ classID {Annotation
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shellac
parents:
diff changeset
908 ( (‘SubClassOf:’ ClassExpression)
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shellac
parents:
diff changeset
909 | (‘EquivalentTo’ ClassExpression)
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shellac
parents:
diff changeset
910 | (’DisjointWith’ ClassExpression)) }
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shellac
parents:
diff changeset
911
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shellac
parents:
diff changeset
912 Appropriate excerpts from OWL Reference:
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shellac
parents:
diff changeset
913
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shellac
parents:
diff changeset
914 ".. Subclass axioms provide us with partial definitions: they represent
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shellac
parents:
diff changeset
915 necessary but not sufficient conditions for establishing class
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
916 membership of an individual."
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shellac
parents:
diff changeset
917
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shellac
parents:
diff changeset
918 ".. A class axiom may contain (multiple) owl:equivalentClass statements"
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shellac
parents:
diff changeset
919
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shellac
parents:
diff changeset
920 "..A class axiom may also contain (multiple) owl:disjointWith statements.."
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shellac
parents:
diff changeset
921
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shellac
parents:
diff changeset
922 "..An owl:complementOf property links a class to precisely one class
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shellac
parents:
diff changeset
923 description."
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shellac
parents:
diff changeset
924
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shellac
parents:
diff changeset
925 """
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shellac
parents:
diff changeset
926
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shellac
parents:
diff changeset
927 def _serialize(self, graph):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
928 for cl in self.subClassOf:
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shellac
parents:
diff changeset
929 CastClass(cl, self.graph).serialize(graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
930 for cl in self.equivalentClass:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
931 CastClass(cl, self.graph).serialize(graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
932 for cl in self.disjointWith:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
933 CastClass(cl, self.graph).serialize(graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
934 if self.complementOf:
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shellac
parents:
diff changeset
935 CastClass(self.complementOf, self.graph).serialize(graph)
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shellac
parents:
diff changeset
936
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shellac
parents:
diff changeset
937 def serialize(self, graph):
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shellac
parents:
diff changeset
938 for fact in self.graph.triples((self.identifier, None, None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
939 graph.add(fact)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
940 self._serialize(graph)
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shellac
parents:
diff changeset
941
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shellac
parents:
diff changeset
942 def setupNounAnnotations(self, nounAnnotations):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
943 if isinstance(nounAnnotations, tuple):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
944 CN_sgProp, CN_plProp = nounAnnotations
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shellac
parents:
diff changeset
945 else:
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shellac
parents:
diff changeset
946 CN_sgProp = nounAnnotations
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
947 CN_plProp = nounAnnotations
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
948
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shellac
parents:
diff changeset
949 if CN_sgProp:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
950 self.CN_sgProp.extent = [(self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
951 self.handleAnnotation(CN_sgProp))]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
952 if CN_plProp:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
953 self.CN_plProp.extent = [(self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
954 self.handleAnnotation(CN_plProp))]
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shellac
parents:
diff changeset
955
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shellac
parents:
diff changeset
956 def __init__(self, identifier=None, subClassOf=None, equivalentClass=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
957 disjointWith=None, complementOf=None, graph=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
958 skipOWLClassMembership=False, comment=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
959 nounAnnotations=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
960 nameAnnotation=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
961 nameIsLabel=False):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
962 super(Class, self).__init__(identifier, graph,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
963 nameAnnotation, nameIsLabel)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
964
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shellac
parents:
diff changeset
965 if nounAnnotations:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
966 self.setupNounAnnotations(nounAnnotations)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
967 if not skipOWLClassMembership \
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
968 and (self.identifier, RDF.type, OWL_NS.Class) \
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
969 not in self.graph and \
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
970 (self.identifier, RDF.type, OWL_NS.Restriction) \
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
971 not in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
972 self.graph.add((self.identifier, RDF.type, OWL_NS.Class))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
973
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shellac
parents:
diff changeset
974 self.subClassOf = subClassOf and subClassOf or []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
975 self.equivalentClass = equivalentClass and equivalentClass or []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
976 self.disjointWith = disjointWith and disjointWith or []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
977 if complementOf:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
978 self.complementOf = complementOf
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
979 self.comment = comment and comment or []
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shellac
parents:
diff changeset
980
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shellac
parents:
diff changeset
981 def _get_extent(self, graph=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
982 for member in (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
983 graph is None and self.graph or graph).subjects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
984 predicate=RDF.type, object=self.identifier):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
985 yield member
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
986
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shellac
parents:
diff changeset
987 def _set_extent(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
988 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
989 return
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shellac
parents:
diff changeset
990 for m in other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
991 self.graph.add((classOrIdentifier(m), RDF.type, self.identifier))
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shellac
parents:
diff changeset
992
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shellac
parents:
diff changeset
993 @TermDeletionHelper(RDF.type)
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shellac
parents:
diff changeset
994 def _del_type(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
995 pass
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shellac
parents:
diff changeset
996
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shellac
parents:
diff changeset
997 extent = property(_get_extent, _set_extent, _del_type)
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shellac
parents:
diff changeset
998
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shellac
parents:
diff changeset
999 def _get_annotation(self, term=RDFS.label):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1000 for annotation in self.graph.objects(subject=self, predicate=term):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1001 yield annotation
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shellac
parents:
diff changeset
1002
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shellac
parents:
diff changeset
1003 annotation = property(_get_annotation, lambda x: x)
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shellac
parents:
diff changeset
1004
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shellac
parents:
diff changeset
1005 def _get_extentQuery(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1006 return (Variable('CLASS'), RDF.type, self.identifier)
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shellac
parents:
diff changeset
1007
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shellac
parents:
diff changeset
1008 def _set_extentQuery(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1009 pass
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shellac
parents:
diff changeset
1010
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shellac
parents:
diff changeset
1011 extentQuery = property(_get_extentQuery, _set_extentQuery)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1012
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shellac
parents:
diff changeset
1013 def __hash__(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1014 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1015 >>> b=Class(OWL_NS.Restriction)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1016 >>> c=Class(OWL_NS.Restriction)
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shellac
parents:
diff changeset
1017 >>> len(set([b,c]))
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shellac
parents:
diff changeset
1018 1
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shellac
parents:
diff changeset
1019 """
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shellac
parents:
diff changeset
1020 return hash(self.identifier)
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shellac
parents:
diff changeset
1021
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shellac
parents:
diff changeset
1022 def __eq__(self, other):
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shellac
parents:
diff changeset
1023 assert isinstance(other, Class), repr(other)
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shellac
parents:
diff changeset
1024 return self.identifier == other.identifier
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shellac
parents:
diff changeset
1025
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parents:
diff changeset
1026 def __iadd__(self, other):
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shellac
parents:
diff changeset
1027 assert isinstance(other, Class)
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shellac
parents:
diff changeset
1028 other.subClassOf = [self]
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shellac
parents:
diff changeset
1029 return self
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shellac
parents:
diff changeset
1030
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shellac
parents:
diff changeset
1031 def __isub__(self, other):
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shellac
parents:
diff changeset
1032 assert isinstance(other, Class)
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shellac
parents:
diff changeset
1033 self.graph.remove(
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shellac
parents:
diff changeset
1034 (classOrIdentifier(other), RDFS.subClassOf, self.identifier))
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shellac
parents:
diff changeset
1035 return self
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shellac
parents:
diff changeset
1036
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shellac
parents:
diff changeset
1037 def __invert__(self):
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shellac
parents:
diff changeset
1038 """
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shellac
parents:
diff changeset
1039 Shorthand for Manchester syntax's not operator
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shellac
parents:
diff changeset
1040 """
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shellac
parents:
diff changeset
1041 return Class(complementOf=self)
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shellac
parents:
diff changeset
1042
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parents:
diff changeset
1043 def __or__(self, other):
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shellac
parents:
diff changeset
1044 """
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shellac
parents:
diff changeset
1045 Construct an anonymous class description consisting of the union of
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1046 this class and 'other' and return it
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shellac
parents:
diff changeset
1047 """
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shellac
parents:
diff changeset
1048 return BooleanClass(
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shellac
parents:
diff changeset
1049 operator=OWL_NS.unionOf, members=[self, other], graph=self.graph)
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shellac
parents:
diff changeset
1050
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shellac
parents:
diff changeset
1051 def __and__(self, other):
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shellac
parents:
diff changeset
1052 """
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shellac
parents:
diff changeset
1053 Construct an anonymous class description consisting of the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1054 intersection of this class and 'other' and return it
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shellac
parents:
diff changeset
1055
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shellac
parents:
diff changeset
1056 >>> exNs = Namespace('http://example.com/')
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shellac
parents:
diff changeset
1057 >>> namespace_manager = NamespaceManager(Graph())
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shellac
parents:
diff changeset
1058 >>> namespace_manager.bind('ex', exNs, override=False)
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shellac
parents:
diff changeset
1059 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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shellac
parents:
diff changeset
1060 >>> g = Graph()
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shellac
parents:
diff changeset
1061 >>> g.namespace_manager = namespace_manager
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shellac
parents:
diff changeset
1062
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shellac
parents:
diff changeset
1063 Chaining 3 intersections
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shellac
parents:
diff changeset
1064
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shellac
parents:
diff changeset
1065 >>> female = Class(exNs.Female, graph=g)
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shellac
parents:
diff changeset
1066 >>> human = Class(exNs.Human, graph=g)
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shellac
parents:
diff changeset
1067 >>> youngPerson = Class(exNs.YoungPerson, graph=g)
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shellac
parents:
diff changeset
1068 >>> youngWoman = female & human & youngPerson
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shellac
parents:
diff changeset
1069 >>> youngWoman #doctest: +SKIP
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shellac
parents:
diff changeset
1070 ex:YoungPerson THAT ( ex:Female AND ex:Human )
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shellac
parents:
diff changeset
1071 >>> isinstance(youngWoman, BooleanClass)
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shellac
parents:
diff changeset
1072 True
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shellac
parents:
diff changeset
1073 >>> isinstance(youngWoman.identifier, BNode)
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shellac
parents:
diff changeset
1074 True
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shellac
parents:
diff changeset
1075 """
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shellac
parents:
diff changeset
1076 return BooleanClass(
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shellac
parents:
diff changeset
1077 operator=OWL_NS.intersectionOf,
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shellac
parents:
diff changeset
1078 members=[self, other], graph=self.graph)
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shellac
parents:
diff changeset
1079
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parents:
diff changeset
1080 def _get_subClassOf(self):
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shellac
parents:
diff changeset
1081 for anc in self.graph.objects(
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shellac
parents:
diff changeset
1082 subject=self.identifier, predicate=RDFS.subClassOf):
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shellac
parents:
diff changeset
1083 yield Class(anc,
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shellac
parents:
diff changeset
1084 graph=self.graph,
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shellac
parents:
diff changeset
1085 skipOWLClassMembership=True)
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shellac
parents:
diff changeset
1086
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parents:
diff changeset
1087 def _set_subClassOf(self, other):
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shellac
parents:
diff changeset
1088 if not other:
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shellac
parents:
diff changeset
1089 return
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shellac
parents:
diff changeset
1090 for sc in other:
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shellac
parents:
diff changeset
1091 self.graph.add(
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shellac
parents:
diff changeset
1092 (self.identifier, RDFS.subClassOf, classOrIdentifier(sc)))
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shellac
parents:
diff changeset
1093
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shellac
parents:
diff changeset
1094 @TermDeletionHelper(RDFS.subClassOf)
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shellac
parents:
diff changeset
1095 def _del_subClassOf(self):
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shellac
parents:
diff changeset
1096 pass
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shellac
parents:
diff changeset
1097
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shellac
parents:
diff changeset
1098 subClassOf = property(_get_subClassOf, _set_subClassOf, _del_subClassOf)
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shellac
parents:
diff changeset
1099
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shellac
parents:
diff changeset
1100 def _get_equivalentClass(self):
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shellac
parents:
diff changeset
1101 for ec in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1102 subject=self.identifier, predicate=OWL_NS.equivalentClass):
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shellac
parents:
diff changeset
1103 yield Class(ec, graph=self.graph)
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shellac
parents:
diff changeset
1104
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shellac
parents:
diff changeset
1105 def _set_equivalentClass(self, other):
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shellac
parents:
diff changeset
1106 if not other:
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shellac
parents:
diff changeset
1107 return
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shellac
parents:
diff changeset
1108 for sc in other:
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shellac
parents:
diff changeset
1109 self.graph.add((self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1110 OWL_NS.equivalentClass, classOrIdentifier(sc)))
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shellac
parents:
diff changeset
1111
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shellac
parents:
diff changeset
1112 @TermDeletionHelper(OWL_NS.equivalentClass)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1113 def _del_equivalentClass(self):
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shellac
parents:
diff changeset
1114 pass
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shellac
parents:
diff changeset
1115
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shellac
parents:
diff changeset
1116 equivalentClass = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1117 _get_equivalentClass, _set_equivalentClass, _del_equivalentClass)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1118
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shellac
parents:
diff changeset
1119 def _get_disjointWith(self):
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shellac
parents:
diff changeset
1120 for dc in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1121 subject=self.identifier, predicate=OWL_NS.disjointWith):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1122 yield Class(dc, graph=self.graph)
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shellac
parents:
diff changeset
1123
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shellac
parents:
diff changeset
1124 def _set_disjointWith(self, other):
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shellac
parents:
diff changeset
1125 if not other:
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shellac
parents:
diff changeset
1126 return
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shellac
parents:
diff changeset
1127 for c in other:
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shellac
parents:
diff changeset
1128 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1129 (self.identifier, OWL_NS.disjointWith, classOrIdentifier(c)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1130
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shellac
parents:
diff changeset
1131 @TermDeletionHelper(OWL_NS.disjointWith)
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shellac
parents:
diff changeset
1132 def _del_disjointWith(self):
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shellac
parents:
diff changeset
1133 pass
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shellac
parents:
diff changeset
1134
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shellac
parents:
diff changeset
1135 disjointWith = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1136 _get_disjointWith, _set_disjointWith, _del_disjointWith)
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shellac
parents:
diff changeset
1137
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shellac
parents:
diff changeset
1138 def _get_complementOf(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1139 comp = list(self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1140 subject=self.identifier, predicate=OWL_NS.complementOf))
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shellac
parents:
diff changeset
1141 if not comp:
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shellac
parents:
diff changeset
1142 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1143 elif len(comp) == 1:
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shellac
parents:
diff changeset
1144 return Class(comp[0], graph=self.graph)
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shellac
parents:
diff changeset
1145 else:
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shellac
parents:
diff changeset
1146 raise Exception(len(comp))
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shellac
parents:
diff changeset
1147
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shellac
parents:
diff changeset
1148 def _set_complementOf(self, other):
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shellac
parents:
diff changeset
1149 if not other:
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shellac
parents:
diff changeset
1150 return
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parents:
diff changeset
1151 self.graph.add(
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parents:
diff changeset
1152 (self.identifier, OWL_NS.complementOf, classOrIdentifier(other)))
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shellac
parents:
diff changeset
1153
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shellac
parents:
diff changeset
1154 @TermDeletionHelper(OWL_NS.complementOf)
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shellac
parents:
diff changeset
1155 def _del_complementOf(self):
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shellac
parents:
diff changeset
1156 pass
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shellac
parents:
diff changeset
1157
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shellac
parents:
diff changeset
1158 complementOf = property(
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shellac
parents:
diff changeset
1159 _get_complementOf, _set_complementOf, _del_complementOf)
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shellac
parents:
diff changeset
1160
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shellac
parents:
diff changeset
1161 def _get_parents(self):
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shellac
parents:
diff changeset
1162 """
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shellac
parents:
diff changeset
1163 computed attributes that returns a generator over taxonomic 'parents'
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shellac
parents:
diff changeset
1164 by disjunction, conjunction, and subsumption
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shellac
parents:
diff changeset
1165
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shellac
parents:
diff changeset
1166 >>> from rdflib.util import first
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shellac
parents:
diff changeset
1167 >>> exNs = Namespace('http://example.com/')
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shellac
parents:
diff changeset
1168 >>> namespace_manager = NamespaceManager(Graph())
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shellac
parents:
diff changeset
1169 >>> namespace_manager.bind('ex', exNs, override=False)
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shellac
parents:
diff changeset
1170 >>> namespace_manager.bind('owl', OWL_NS, override=False)
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shellac
parents:
diff changeset
1171 >>> g = Graph()
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shellac
parents:
diff changeset
1172 >>> g.namespace_manager = namespace_manager
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shellac
parents:
diff changeset
1173 >>> Individual.factoryGraph = g
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shellac
parents:
diff changeset
1174 >>> brother = Class(exNs.Brother)
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shellac
parents:
diff changeset
1175 >>> sister = Class(exNs.Sister)
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shellac
parents:
diff changeset
1176 >>> sibling = brother | sister
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shellac
parents:
diff changeset
1177 >>> sibling.identifier = exNs.Sibling
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shellac
parents:
diff changeset
1178 >>> sibling #doctest: +SKIP
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shellac
parents:
diff changeset
1179 ( ex:Brother OR ex:Sister )
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shellac
parents:
diff changeset
1180 >>> first(brother.parents) #doctest: +SKIP
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shellac
parents:
diff changeset
1181 Class: ex:Sibling EquivalentTo: ( ex:Brother OR ex:Sister )
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shellac
parents:
diff changeset
1182 >>> parent = Class(exNs.Parent)
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shellac
parents:
diff changeset
1183 >>> male = Class(exNs.Male)
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shellac
parents:
diff changeset
1184 >>> father = parent & male
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shellac
parents:
diff changeset
1185 >>> father.identifier = exNs.Father
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shellac
parents:
diff changeset
1186 >>> list(father.parents) #doctest: +SKIP
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shellac
parents:
diff changeset
1187 [Class: ex:Parent , Class: ex:Male ]
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shellac
parents:
diff changeset
1188
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shellac
parents:
diff changeset
1189 """
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shellac
parents:
diff changeset
1190 for parent in itertools.chain(self.subClassOf,
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shellac
parents:
diff changeset
1191 self.equivalentClass):
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shellac
parents:
diff changeset
1192 yield parent
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shellac
parents:
diff changeset
1193
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shellac
parents:
diff changeset
1194 link = first(self.factoryGraph.subjects(RDF.first, self.identifier))
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parents:
diff changeset
1195 if link:
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parents:
diff changeset
1196 listSiblings = list(self.factoryGraph.transitive_subjects(RDF.rest,
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shellac
parents:
diff changeset
1197 link))
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parents:
diff changeset
1198 if listSiblings:
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shellac
parents:
diff changeset
1199 collectionHead = listSiblings[-1]
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parents:
diff changeset
1200 else:
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parents:
diff changeset
1201 collectionHead = link
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parents:
diff changeset
1202 for disjCls in self.factoryGraph.subjects(
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shellac
parents:
diff changeset
1203 OWL_NS.unionOf, collectionHead):
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shellac
parents:
diff changeset
1204 if isinstance(disjCls, URIRef):
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shellac
parents:
diff changeset
1205 yield Class(disjCls, skipOWLClassMembership=True)
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shellac
parents:
diff changeset
1206 for rdfList in self.factoryGraph.objects(
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shellac
parents:
diff changeset
1207 self.identifier, OWL_NS.intersectionOf):
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shellac
parents:
diff changeset
1208 for member in OWLRDFListProxy([rdfList], graph=self.factoryGraph):
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shellac
parents:
diff changeset
1209 if isinstance(member, URIRef):
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shellac
parents:
diff changeset
1210 yield Class(member, skipOWLClassMembership=True)
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shellac
parents:
diff changeset
1211
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parents:
diff changeset
1212 parents = property(_get_parents)
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shellac
parents:
diff changeset
1213
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parents:
diff changeset
1214 def isPrimitive(self):
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parents:
diff changeset
1215 if (self.identifier, RDF.type, OWL_NS.Restriction) in self.graph:
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shellac
parents:
diff changeset
1216 return False
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shellac
parents:
diff changeset
1217 # sc = list(self.subClassOf)
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shellac
parents:
diff changeset
1218 ec = list(self.equivalentClass)
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shellac
parents:
diff changeset
1219 for boolClass, p, rdfList in self.graph.triples_choices(
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shellac
parents:
diff changeset
1220 (self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1221 [OWL_NS.intersectionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1222 OWL_NS.unionOf],
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shellac
parents:
diff changeset
1223 None)):
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shellac
parents:
diff changeset
1224 ec.append(manchesterSyntax(rdfList, self.graph, boolean=p))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1225 for e in ec:
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shellac
parents:
diff changeset
1226 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1227 if self.complementOf:
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shellac
parents:
diff changeset
1228 return False
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shellac
parents:
diff changeset
1229 return True
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shellac
parents:
diff changeset
1230
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shellac
parents:
diff changeset
1231 def subSumpteeIds(self):
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shellac
parents:
diff changeset
1232 for s in self.graph.subjects(
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shellac
parents:
diff changeset
1233 predicate=RDFS.subClassOf, object=self.identifier):
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shellac
parents:
diff changeset
1234 yield s
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shellac
parents:
diff changeset
1235
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shellac
parents:
diff changeset
1236 # def __iter__(self):
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shellac
parents:
diff changeset
1237 # for s in self.graph.subjects(
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shellac
parents:
diff changeset
1238 # predicate=RDFS.subClassOf,object=self.identifier):
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shellac
parents:
diff changeset
1239 # yield Class(s,skipOWLClassMembership=True)
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shellac
parents:
diff changeset
1240
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shellac
parents:
diff changeset
1241 def __repr__(self, full=False, normalization=True):
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shellac
parents:
diff changeset
1242 """
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shellac
parents:
diff changeset
1243 Returns the Manchester Syntax equivalent for this class
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shellac
parents:
diff changeset
1244 """
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shellac
parents:
diff changeset
1245 exprs = []
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shellac
parents:
diff changeset
1246 sc = list(self.subClassOf)
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shellac
parents:
diff changeset
1247 ec = list(self.equivalentClass)
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shellac
parents:
diff changeset
1248 for boolClass, p, rdfList in self.graph.triples_choices(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1249 (self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1250 [OWL_NS.intersectionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1251 OWL_NS.unionOf],
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shellac
parents:
diff changeset
1252 None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1253 ec.append(manchesterSyntax(rdfList, self.graph, boolean=p))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1254 dc = list(self.disjointWith)
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shellac
parents:
diff changeset
1255 c = self.complementOf
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shellac
parents:
diff changeset
1256 if c:
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shellac
parents:
diff changeset
1257 dc.append(c)
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shellac
parents:
diff changeset
1258 klassKind = ''
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shellac
parents:
diff changeset
1259 label = list(self.graph.objects(self.identifier, RDFS.label))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1260 label = label and '(' + label[0] + ')' or ''
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shellac
parents:
diff changeset
1261 if sc:
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shellac
parents:
diff changeset
1262 if full:
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shellac
parents:
diff changeset
1263 scJoin = '\n '
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shellac
parents:
diff changeset
1264 else:
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shellac
parents:
diff changeset
1265 scJoin = ', '
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shellac
parents:
diff changeset
1266 necStatements = [
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shellac
parents:
diff changeset
1267 isinstance(s, Class) and isinstance(self.identifier, BNode)
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shellac
parents:
diff changeset
1268 and repr(CastClass(s, self.graph)) or
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1269 # repr(BooleanClass(classOrIdentifier(s),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1270 # operator=None,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1271 # graph=self.graph)) or
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1272 manchesterSyntax(classOrIdentifier(s), self.graph) for s in sc]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1273 if necStatements:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1274 klassKind = "Primitive Type %s" % label
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1275 exprs.append("SubClassOf: %s" % scJoin.join(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1276 [str(n) for n in necStatements]))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1277 if full:
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shellac
parents:
diff changeset
1278 exprs[-1] = "\n " + exprs[-1]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1279 if ec:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1280 nec_SuffStatements = [
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1281 isinstance(s, str) and s
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1282 or manchesterSyntax(classOrIdentifier(s), self.graph) for s in ec]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1283 if nec_SuffStatements:
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shellac
parents:
diff changeset
1284 klassKind = "A Defined Class %s" % label
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shellac
parents:
diff changeset
1285 exprs.append("EquivalentTo: %s" % ', '.join(nec_SuffStatements))
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shellac
parents:
diff changeset
1286 if full:
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shellac
parents:
diff changeset
1287 exprs[-1] = "\n " + exprs[-1]
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shellac
parents:
diff changeset
1288 if dc:
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shellac
parents:
diff changeset
1289 exprs.append("DisjointWith %s\n" % '\n '.join(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1290 [manchesterSyntax(classOrIdentifier(s), self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1291 for s in dc]))
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shellac
parents:
diff changeset
1292 if full:
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shellac
parents:
diff changeset
1293 exprs[-1] = "\n " + exprs[-1]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1294 descr = list(self.graph.objects(self.identifier, RDFS.comment))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1295 if full and normalization:
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shellac
parents:
diff changeset
1296 klassDescr = klassKind and '\n ## %s ##' % klassKind +\
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1297 (descr and "\n %s" % descr[0] or '') + \
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1298 ' . '.join(exprs) or ' . '.join(exprs)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1299 else:
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shellac
parents:
diff changeset
1300 klassDescr = full and (descr and "\n %s" %
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1301 descr[0] or '') or '' + ' . '.join(exprs)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1302 return (isinstance(self.identifier, BNode) and
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1303 "Some Class " or
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1304 "Class: %s " % self.qname) + klassDescr
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1305
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shellac
parents:
diff changeset
1306
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shellac
parents:
diff changeset
1307 class OWLRDFListProxy(object):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1308 def __init__(self, rdfList, members=None, graph=None):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1309 if graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1310 self.graph = graph
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1311 members = members and members or []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1312 if rdfList:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1313 self._rdfList = Collection(self.graph, rdfList[0])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1314 for member in members:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1315 if member not in self._rdfList:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1316 self._rdfList.append(classOrIdentifier(member))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1317 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1318 self._rdfList = Collection(self.graph, BNode(),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1319 [classOrIdentifier(m) for m in members])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1320 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1321 (self.identifier, self._operator, self._rdfList.uri))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1322
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1323 def __eq__(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1324 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1325 Equivalence of boolean class constructors is determined by
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1326 equivalence of its members
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1327 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1328 assert isinstance(other, Class), repr(other) + repr(type(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1329 if isinstance(other, BooleanClass):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1330 length = len(self)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1331 if length != len(other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1332 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1333 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1334 for idx in range(length):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1335 if self[idx] != other[idx]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1336 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1337 return True
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1338 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1339 return self.identifier == other.identifier
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1340
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1341 # Redirect python list accessors to the underlying Collection instance
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1342 def __len__(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1343 return len(self._rdfList)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1344
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shellac
parents:
diff changeset
1345 def index(self, item):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1346 return self._rdfList.index(classOrIdentifier(item))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1347
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1348 def __getitem__(self, key):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1349 return self._rdfList[key]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1350
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1351 def __setitem__(self, key, value):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1352 self._rdfList[key] = classOrIdentifier(value)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1353
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1354 def __delitem__(self, key):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1355 del self._rdfList[key]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1356
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1357 def clear(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1358 self._rdfList.clear()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1359
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1360 def __iter__(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1361 for item in self._rdfList:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1362 yield item
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1363
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1364 def __contains__(self, item):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1365 for i in self._rdfList:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1366 if i == classOrIdentifier(item):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1367 return 1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1368 return 0
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1369
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1370 def append(self, item):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1371 self._rdfList.append(item)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1372
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shellac
parents:
diff changeset
1373 def __iadd__(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1374 self._rdfList.append(classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1375 return self
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1376
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1377
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1378 class EnumeratedClass(OWLRDFListProxy, Class):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1379 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1380 Class for owl:oneOf forms:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1381
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1382 OWL Abstract Syntax is used
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1383
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1384 axiom ::= 'EnumeratedClass('
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1385 classID ['Deprecated'] { annotation } { individualID } ')'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1386
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1387
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shellac
parents:
diff changeset
1388 >>> exNs = Namespace('http://example.com/')
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1389 >>> namespace_manager = NamespaceManager(Graph())
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1390 >>> namespace_manager.bind('ex', exNs, override=False)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1391 >>> namespace_manager.bind('owl', OWL_NS, override=False)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1392 >>> g = Graph()
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shellac
parents:
diff changeset
1393 >>> g.namespace_manager = namespace_manager
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1394 >>> Individual.factoryGraph = g
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1395 >>> ogbujiBros = EnumeratedClass(exNs.ogbujicBros,
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1396 ... members=[exNs.chime,
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1397 ... exNs.uche,
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1398 ... exNs.ejike])
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1399 >>> ogbujiBros #doctest: +SKIP
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parents:
diff changeset
1400 { ex:chime ex:uche ex:ejike }
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parents:
diff changeset
1401 >>> col = Collection(g, first(
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parents:
diff changeset
1402 ... g.objects(predicate=OWL_NS.oneOf, subject=ogbujiBros.identifier)))
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parents:
diff changeset
1403 >>> [g.qname(item) for item in col]
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parents:
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1404 [u'ex:chime', u'ex:uche', u'ex:ejike']
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parents:
diff changeset
1405 >>> print(g.serialize(format='n3')) #doctest: +SKIP
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1406 @prefix ex: <http://example.com/> .
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1407 @prefix owl: <http://www.w3.org/2002/07/owl#> .
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1408 @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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diff changeset
1409 <BLANKLINE>
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diff changeset
1410 ex:ogbujicBros a owl:Class;
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parents:
diff changeset
1411 owl:oneOf ( ex:chime ex:uche ex:ejike ) .
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diff changeset
1412 <BLANKLINE>
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diff changeset
1413 <BLANKLINE>
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1414 """
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1415 _operator = OWL_NS.oneOf
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1416
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1417 def isPrimitive(self):
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1418 return False
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1419
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1420 def __init__(self, identifier=None, members=None, graph=None):
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1421 Class.__init__(self, identifier, graph=graph)
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1422 members = members and members or []
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1423 rdfList = list(self.graph.objects(
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diff changeset
1424 predicate=OWL_NS.oneOf, subject=self.identifier))
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diff changeset
1425 OWLRDFListProxy.__init__(self, rdfList, members)
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1426
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1427 def __repr__(self):
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1428 """
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1429 Returns the Manchester Syntax equivalent for this class
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1430 """
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1431 return manchesterSyntax(
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1432 self._rdfList.uri, self.graph, boolean=self._operator)
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1433
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1434 def serialize(self, graph):
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diff changeset
1435 clonedList = Collection(graph, BNode())
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diff changeset
1436 for cl in self._rdfList:
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1437 clonedList.append(cl)
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1438 CastClass(cl, self.graph).serialize(graph)
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1439
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1440 graph.add((self.identifier, self._operator, clonedList.uri))
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1441 for s, p, o in self.graph.triples((self.identifier, None, None)):
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1442 if p != self._operator:
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1443 graph.add((s, p, o))
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diff changeset
1444 self._serialize(graph)
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1445
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1446
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1447 BooleanPredicates = [OWL_NS.intersectionOf, OWL_NS.unionOf]
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1448
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1449
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1450 class BooleanClassExtentHelper:
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1451 """
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diff changeset
1452 >>> testGraph = Graph()
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1453 >>> Individual.factoryGraph = testGraph
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diff changeset
1454 >>> EX = Namespace("http://example.com/")
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diff changeset
1455 >>> namespace_manager = NamespaceManager(Graph())
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diff changeset
1456 >>> namespace_manager.bind('ex', EX, override=False)
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diff changeset
1457 >>> testGraph.namespace_manager = namespace_manager
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1458 >>> fire = Class(EX.Fire)
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diff changeset
1459 >>> water = Class(EX.Water)
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1460 >>> testClass = BooleanClass(members=[fire, water])
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diff changeset
1461 >>> testClass2 = BooleanClass(
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diff changeset
1462 ... operator=OWL_NS.unionOf, members=[fire, water])
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diff changeset
1463 >>> for c in BooleanClass.getIntersections():
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diff changeset
1464 ... print(c) #doctest: +SKIP
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diff changeset
1465 ( ex:Fire AND ex:Water )
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diff changeset
1466 >>> for c in BooleanClass.getUnions():
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diff changeset
1467 ... print(c) #doctest: +SKIP
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diff changeset
1468 ( ex:Fire OR ex:Water )
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diff changeset
1469 """
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1470
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1471 def __init__(self, operator):
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diff changeset
1472 self.operator = operator
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1473
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1474 def __call__(self, f):
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diff changeset
1475 def _getExtent():
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diff changeset
1476 for c in Individual.factoryGraph.subjects(self.operator):
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diff changeset
1477 yield BooleanClass(c, operator=self.operator)
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parents:
diff changeset
1478 return _getExtent
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1479
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1480
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diff changeset
1481 class Callable():
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diff changeset
1482 def __init__(self, anycallable):
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diff changeset
1483 self.__call__ = anycallable
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diff changeset
1484
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diff changeset
1485
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diff changeset
1486 class BooleanClass(OWLRDFListProxy, Class):
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diff changeset
1487 """
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diff changeset
1488 See: http://www.w3.org/TR/owl-ref/#Boolean
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diff changeset
1489
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diff changeset
1490 owl:complementOf is an attribute of Class, however
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1491
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1492 """
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diff changeset
1493 @BooleanClassExtentHelper(OWL_NS.intersectionOf)
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diff changeset
1494 @Callable
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diff changeset
1495 def getIntersections():
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1496 pass
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diff changeset
1497 getIntersections = Callable(getIntersections)
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1498
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diff changeset
1499 @BooleanClassExtentHelper(OWL_NS.unionOf)
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diff changeset
1500 @Callable
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diff changeset
1501 def getUnions():
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1502 pass
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diff changeset
1503 getUnions = Callable(getUnions)
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1504
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1505 def __init__(self, identifier=None, operator=OWL_NS.intersectionOf,
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1506 members=None, graph=None):
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diff changeset
1507 if operator is None:
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diff changeset
1508 props = []
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diff changeset
1509 for s, p, o in graph.triples_choices((identifier,
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diff changeset
1510 [OWL_NS.intersectionOf,
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diff changeset
1511 OWL_NS.unionOf],
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diff changeset
1512 None)):
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diff changeset
1513 props.append(p)
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diff changeset
1514 operator = p
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1515 assert len(props) == 1, repr(props)
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diff changeset
1516 Class.__init__(self, identifier, graph=graph)
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diff changeset
1517 assert operator in [OWL_NS.intersectionOf,
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diff changeset
1518 OWL_NS.unionOf], str(operator)
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diff changeset
1519 self._operator = operator
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1520 rdfList = list(
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diff changeset
1521 self.graph.objects(predicate=operator, subject=self.identifier))
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diff changeset
1522 assert not members or not rdfList, \
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diff changeset
1523 "This is a previous boolean class description!" + \
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diff changeset
1524 repr(Collection(self.graph, rdfList[0]).n3())
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diff changeset
1525 OWLRDFListProxy.__init__(self, rdfList, members)
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diff changeset
1526
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diff changeset
1527 def copy(self):
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diff changeset
1528 """
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diff changeset
1529 Create a copy of this class
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1530 """
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diff changeset
1531 copyOfClass = BooleanClass(
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diff changeset
1532 operator=self._operator, members=list(self), graph=self.graph)
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diff changeset
1533 return copyOfClass
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1534
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1535 def serialize(self, graph):
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diff changeset
1536 clonedList = Collection(graph, BNode())
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diff changeset
1537 for cl in self._rdfList:
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diff changeset
1538 clonedList.append(cl)
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diff changeset
1539 CastClass(cl, self.graph).serialize(graph)
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1540
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diff changeset
1541 graph.add((self.identifier, self._operator, clonedList.uri))
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1542
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1543 for s, p, o in self.graph.triples((self.identifier, None, None)):
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1544 if p != self._operator:
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1545 graph.add((s, p, o))
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diff changeset
1546 self._serialize(graph)
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1547
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1548 def isPrimitive(self):
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diff changeset
1549 return False
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1550
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1551 def changeOperator(self, newOperator):
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1552 """
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diff changeset
1553 Converts a unionOf / intersectionOf class expression into one
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diff changeset
1554 that instead uses the given operator
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diff changeset
1555
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1556
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1557 >>> testGraph = Graph()
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diff changeset
1558 >>> Individual.factoryGraph = testGraph
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diff changeset
1559 >>> EX = Namespace("http://example.com/")
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parents:
diff changeset
1560 >>> namespace_manager = NamespaceManager(Graph())
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parents:
diff changeset
1561 >>> namespace_manager.bind('ex', EX, override=False)
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parents:
diff changeset
1562 >>> testGraph.namespace_manager = namespace_manager
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diff changeset
1563 >>> fire = Class(EX.Fire)
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diff changeset
1564 >>> water = Class(EX.Water)
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1565 >>> testClass = BooleanClass(members=[fire,water])
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diff changeset
1566 >>> testClass #doctest: +SKIP
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diff changeset
1567 ( ex:Fire AND ex:Water )
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parents:
diff changeset
1568 >>> testClass.changeOperator(OWL_NS.unionOf)
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diff changeset
1569 >>> testClass #doctest: +SKIP
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diff changeset
1570 ( ex:Fire OR ex:Water )
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diff changeset
1571 >>> try: testClass.changeOperator(OWL_NS.unionOf)
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diff changeset
1572 ... except Exception%s: print(e)
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diff changeset
1573 The new operator is already being used!
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diff changeset
1574
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diff changeset
1575 """ % 'as e' if PY3 else ', e'
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diff changeset
1576 assert newOperator != self._operator, \
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diff changeset
1577 "The new operator is already being used!"
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diff changeset
1578 self.graph.remove((self.identifier, self._operator, self._rdfList.uri))
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diff changeset
1579 self.graph.add((self.identifier, newOperator, self._rdfList.uri))
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diff changeset
1580 self._operator = newOperator
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diff changeset
1581
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1582 def __repr__(self):
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diff changeset
1583 """
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diff changeset
1584 Returns the Manchester Syntax equivalent for this class
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diff changeset
1585 """
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diff changeset
1586 return manchesterSyntax(
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diff changeset
1587 self._rdfList.uri, self.graph, boolean=self._operator)
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diff changeset
1588
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1589 def __or__(self, other):
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diff changeset
1590 """
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diff changeset
1591 Adds other to the list and returns self
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diff changeset
1592 """
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diff changeset
1593 assert self._operator == OWL_NS.unionOf
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diff changeset
1594 self._rdfList.append(classOrIdentifier(other))
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diff changeset
1595 return self
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diff changeset
1596
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diff changeset
1597
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diff changeset
1598 def AllDifferent(members):
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diff changeset
1599 """
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parents:
diff changeset
1600 DisjointClasses(' description description { description } ')'
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diff changeset
1601
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diff changeset
1602 """
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diff changeset
1603 pass
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diff changeset
1604
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diff changeset
1605
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diff changeset
1606 class Restriction(Class):
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parents:
diff changeset
1607 """
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parents:
diff changeset
1608 restriction ::= 'restriction('
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parents:
diff changeset
1609 datavaluedPropertyID dataRestrictionComponent
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parents:
diff changeset
1610 { dataRestrictionComponent } ')'
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parents:
diff changeset
1611 | 'restriction(' individualvaluedPropertyID
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parents:
diff changeset
1612 individualRestrictionComponent
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diff changeset
1613 { individualRestrictionComponent } ')'
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parents:
diff changeset
1614 """
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diff changeset
1615
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diff changeset
1616 restrictionKinds = [OWL_NS.allValuesFrom,
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diff changeset
1617 OWL_NS.someValuesFrom,
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diff changeset
1618 OWL_NS.hasValue,
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diff changeset
1619 OWL_NS.maxCardinality,
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diff changeset
1620 OWL_NS.minCardinality]
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1621
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diff changeset
1622 def __init__(self,
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diff changeset
1623 onProperty,
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diff changeset
1624 graph=Graph(),
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diff changeset
1625 allValuesFrom=None,
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diff changeset
1626 someValuesFrom=None,
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diff changeset
1627 value=None,
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diff changeset
1628 cardinality=None,
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diff changeset
1629 maxCardinality=None,
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diff changeset
1630 minCardinality=None,
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diff changeset
1631 identifier=None):
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diff changeset
1632 super(Restriction, self).__init__(identifier,
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diff changeset
1633 graph=graph,
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diff changeset
1634 skipOWLClassMembership=True)
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diff changeset
1635 if (self.identifier,
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diff changeset
1636 OWL_NS.onProperty,
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diff changeset
1637 propertyOrIdentifier(onProperty)) not in graph:
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diff changeset
1638 graph.add((self.identifier, OWL_NS.onProperty,
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parents:
diff changeset
1639 propertyOrIdentifier(onProperty)))
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diff changeset
1640 self.onProperty = onProperty
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diff changeset
1641 restrTypes = [
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1642 (allValuesFrom, OWL_NS.allValuesFrom),
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diff changeset
1643 (someValuesFrom, OWL_NS.someValuesFrom),
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parents:
diff changeset
1644 (value, OWL_NS.hasValue),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1645 (cardinality, OWL_NS.cardinality),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1646 (maxCardinality, OWL_NS.maxCardinality),
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1647 (minCardinality, OWL_NS.minCardinality)]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1648 validRestrProps = [(i, oTerm) for (i, oTerm) in restrTypes if i]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1649 assert len(validRestrProps)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1650 restrictionRange, restrictionType = validRestrProps.pop()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1651 self.restrictionType = restrictionType
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1652 if isinstance(restrictionRange, Identifier):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1653 self.restrictionRange = restrictionRange
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1654 elif isinstance(restrictionRange, Class):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1655 self.restrictionRange = classOrIdentifier(restrictionRange)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1656 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1657 self.restrictionRange = first(self.graph.objects(self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1658 restrictionType))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1659 if (self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1660 restrictionType,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1661 self.restrictionRange) not in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1662 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1663 (self.identifier, restrictionType, self.restrictionRange))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1664 assert self.restrictionRange is not None, Class(self.identifier)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1665 if (self.identifier, RDF.type, OWL_NS.Restriction) not in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1666 self.graph.add((self.identifier, RDF.type, OWL_NS.Restriction))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1667 self.graph.remove((self.identifier, RDF.type, OWL_NS.Class))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1668
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1669 def serialize(self, graph):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1670 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1671 >>> g1 = Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1672 >>> g2 = Graph()
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1673 >>> EX = Namespace("http://example.com/")
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1674 >>> namespace_manager = NamespaceManager(g1)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1675 >>> namespace_manager.bind('ex', EX, override=False)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1676 >>> namespace_manager = NamespaceManager(g2)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1677 >>> namespace_manager.bind('ex', EX, override=False)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1678 >>> Individual.factoryGraph = g1
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1679 >>> prop = Property(EX.someProp, baseType=OWL_NS.DatatypeProperty)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1680 >>> restr1 = (Property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1681 ... EX.someProp,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1682 ... baseType=OWL_NS.DatatypeProperty)) | some | (Class(EX.Foo))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1683 >>> restr1 #doctest: +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1684 ( ex:someProp SOME ex:Foo )
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1685 >>> restr1.serialize(g2)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1686 >>> Individual.factoryGraph = g2
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1687 >>> list(Property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1688 ... EX.someProp,baseType=None).type
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1689 ... ) #doctest: +NORMALIZE_WHITESPACE +SKIP
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1690 [rdflib.term.URIRef(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1691 u'http://www.w3.org/2002/07/owl#DatatypeProperty')]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1692 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1693 Property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1694 self.onProperty, graph=self.graph, baseType=None).serialize(graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1695 for s, p, o in self.graph.triples((self.identifier, None, None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1696 graph.add((s, p, o))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1697 if p in [OWL_NS.allValuesFrom, OWL_NS.someValuesFrom]:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1698 CastClass(o, self.graph).serialize(graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1699
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1700 def isPrimitive(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1701 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1702
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1703 def __hash__(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1704 return hash((self.onProperty, self.restrictionRange))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1705
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1706 def __eq__(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1707 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1708 Equivalence of restrictions is determined by equivalence of the
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1709 property in question and the restriction 'range'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1710 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1711 assert isinstance(other, Class), repr(other) + repr(type(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1712 if isinstance(other, Restriction):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1713 return other.onProperty == self.onProperty and \
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1714 other.restrictionRange == self.restrictionRange
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1715 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1716 return False
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1717
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1718 def _get_onProperty(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1719 return list(self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1720 subject=self.identifier, predicate=OWL_NS.onProperty))[0]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1721
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1722 def _set_onProperty(self, prop):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1723 triple = (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1724 self.identifier, OWL_NS.onProperty, propertyOrIdentifier(prop))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1725 if not prop:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1726 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1727 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1728 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1729 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1730 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1731
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1732 @TermDeletionHelper(OWL_NS.onProperty)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1733 def _del_onProperty(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1734 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1735
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1736 onProperty = property(_get_onProperty, _set_onProperty, _del_onProperty)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1737
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1738 def _get_allValuesFrom(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1739 for i in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1740 subject=self.identifier, predicate=OWL_NS.allValuesFrom):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1741 return Class(i, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1742 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1743
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1744 def _set_allValuesFrom(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1745 triple = (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1746 self.identifier, OWL_NS.allValuesFrom, classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1747 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1748 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1749 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1750 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1751 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1752 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1753
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1754 @TermDeletionHelper(OWL_NS.allValuesFrom)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1755 def _del_allValuesFrom(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1756 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1757
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1758 allValuesFrom = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1759 _get_allValuesFrom, _set_allValuesFrom, _del_allValuesFrom)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1760
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1761 def _get_someValuesFrom(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1762 for i in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1763 subject=self.identifier, predicate=OWL_NS.someValuesFrom):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1764 return Class(i, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1765 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1766
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1767 def _set_someValuesFrom(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1768 triple = (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1769 self.identifier, OWL_NS.someValuesFrom, classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1770 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1771 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1772 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1773 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1774 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1775 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1776
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1777 @TermDeletionHelper(OWL_NS.someValuesFrom)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1778 def _del_someValuesFrom(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1779 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1780
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1781 someValuesFrom = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1782 _get_someValuesFrom, _set_someValuesFrom, _del_someValuesFrom)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1783
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1784 def _get_hasValue(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1785 for i in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1786 subject=self.identifier, predicate=OWL_NS.hasValue):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1787 return Class(i, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1788 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1789
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1790 def _set_hasValue(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1791 triple = (self.identifier, OWL_NS.hasValue, classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1792 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1793 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1794 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1795 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1796 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1797 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1798
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1799 @TermDeletionHelper(OWL_NS.hasValue)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1800 def _del_hasValue(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1801 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1802
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1803 hasValue = property(_get_hasValue, _set_hasValue, _del_hasValue)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1804
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1805 def _get_cardinality(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1806 for i in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1807 subject=self.identifier, predicate=OWL_NS.cardinality):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1808 return Class(i, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1809 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1810
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1811 def _set_cardinality(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1812 triple = (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1813 self.identifier, OWL_NS.cardinality, classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1814 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1815 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1816 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1817 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1818 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1819 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1820
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1821 @TermDeletionHelper(OWL_NS.cardinality)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1822 def _del_cardinality(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1823 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1824
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1825 cardinality = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1826 _get_cardinality, _set_cardinality, _del_cardinality)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1827
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1828 def _get_maxCardinality(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1829 for i in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1830 subject=self.identifier, predicate=OWL_NS.maxCardinality):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1831 return Class(i, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1832 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1833
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1834 def _set_maxCardinality(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1835 triple = (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1836 self.identifier, OWL_NS.maxCardinality, classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1837 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1838 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1839 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1840 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1841 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1842 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1843
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1844 @TermDeletionHelper(OWL_NS.maxCardinality)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1845 def _del_maxCardinality(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1846 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1847
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1848 maxCardinality = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1849 _get_maxCardinality, _set_maxCardinality, _del_maxCardinality)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1850
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1851 def _get_minCardinality(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1852 for i in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1853 subject=self.identifier, predicate=OWL_NS.minCardinality):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1854 return Class(i, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1855 return None
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1856
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1857 def _set_minCardinality(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1858 triple = (
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1859 self.identifier, OWL_NS.minCardinality, classOrIdentifier(other))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1860 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1861 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1862 elif triple in self.graph:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1863 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1864 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1865 self.graph.set(triple)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1866
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1867 @TermDeletionHelper(OWL_NS.minCardinality)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1868 def _del_minCardinality(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1869 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1870
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1871 minCardinality = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1872 _get_minCardinality, _set_minCardinality, _del_minCardinality)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1873
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1874 def restrictionKind(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1875 for p in self.graph.triple_choices((self.identifier,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1876 self.restrictionKinds,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1877 None)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1878 return p.split(OWL_NS)[-1]
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1879 raise
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1880
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1881 def __repr__(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1882 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1883 Returns the Manchester Syntax equivalent for this restriction
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1884 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1885 return manchesterSyntax(self.identifier, self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1886
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1887 ### Infix Operators ###
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1888
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1889
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1890 some = Infix(lambda prop, _class: Restriction(prop, graph=_class.graph,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1891 someValuesFrom=_class))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1892 only = Infix(lambda prop, _class: Restriction(prop, graph=_class.graph,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1893 allValuesFrom=_class))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
1894 max = Infix(lambda prop, _class: Restriction(prop, graph=prop.graph,
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parents:
diff changeset
1895 maxCardinality=_class))
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shellac
parents:
diff changeset
1896 min = Infix(lambda prop, _class: Restriction(prop, graph=prop.graph,
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shellac
parents:
diff changeset
1897 minCardinality=_class))
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shellac
parents:
diff changeset
1898 exactly = Infix(lambda prop, _class: Restriction(prop, graph=prop.graph,
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shellac
parents:
diff changeset
1899 cardinality=_class))
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parents:
diff changeset
1900 value = Infix(
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shellac
parents:
diff changeset
1901 lambda prop, _class: Restriction(prop, graph=prop.graph, value=_class))
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parents:
diff changeset
1902
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parents:
diff changeset
1903 PropertyAbstractSyntax =\
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parents:
diff changeset
1904 """
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parents:
diff changeset
1905 %s( %s { %s }
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shellac
parents:
diff changeset
1906 %s
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shellac
parents:
diff changeset
1907 { 'super(' datavaluedPropertyID ')'} ['Functional']
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shellac
parents:
diff changeset
1908 { domain( %s ) } { range( %s ) } )"""
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parents:
diff changeset
1909
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parents:
diff changeset
1910
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shellac
parents:
diff changeset
1911 class Property(AnnotatableTerms):
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parents:
diff changeset
1912 """
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parents:
diff changeset
1913 axiom ::= 'DatatypeProperty(' datavaluedPropertyID ['Deprecated']
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parents:
diff changeset
1914 { annotation }
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parents:
diff changeset
1915 { 'super(' datavaluedPropertyID ')'} ['Functional']
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shellac
parents:
diff changeset
1916 { 'domain(' description ')' } { 'range(' dataRange ')' } ')'
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parents:
diff changeset
1917 | 'ObjectProperty(' individualvaluedPropertyID ['Deprecated']
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parents:
diff changeset
1918 { annotation }
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parents:
diff changeset
1919 { 'super(' individualvaluedPropertyID ')' }
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parents:
diff changeset
1920 [ 'inverseOf(' individualvaluedPropertyID ')' ] [ 'Symmetric' ]
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shellac
parents:
diff changeset
1921 [ 'Functional' | 'InverseFunctional' |
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parents:
diff changeset
1922 'Functional' 'InverseFunctional' |
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parents:
diff changeset
1923 'Transitive' ]
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parents:
diff changeset
1924 { 'domain(' description ')' } { 'range(' description ')' } ')
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shellac
parents:
diff changeset
1925 """
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shellac
parents:
diff changeset
1926
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parents:
diff changeset
1927 def setupVerbAnnotations(self, verbAnnotations):
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shellac
parents:
diff changeset
1928 if isinstance(verbAnnotations, tuple):
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shellac
parents:
diff changeset
1929 TV_sgProp, TV_plProp, TV_vbg = verbAnnotations
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parents:
diff changeset
1930 else:
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parents:
diff changeset
1931 TV_sgProp = verbAnnotations
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parents:
diff changeset
1932 TV_plProp = verbAnnotations
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parents:
diff changeset
1933 TV_vbg = verbAnnotations
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shellac
parents:
diff changeset
1934 if TV_sgProp:
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parents:
diff changeset
1935 self.TV_sgProp.extent = [(self.identifier,
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shellac
parents:
diff changeset
1936 self.handleAnnotation(TV_sgProp))]
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shellac
parents:
diff changeset
1937 if TV_plProp:
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shellac
parents:
diff changeset
1938 self.TV_plProp.extent = [(self.identifier,
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shellac
parents:
diff changeset
1939 self.handleAnnotation(TV_plProp))]
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shellac
parents:
diff changeset
1940 if TV_vbg:
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shellac
parents:
diff changeset
1941 self.TV_vbgProp.extent = [(self.identifier,
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shellac
parents:
diff changeset
1942 self.handleAnnotation(TV_vbg))]
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shellac
parents:
diff changeset
1943
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shellac
parents:
diff changeset
1944 def __init__(
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shellac
parents:
diff changeset
1945 self, identifier=None, graph=None, baseType=OWL_NS.ObjectProperty,
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shellac
parents:
diff changeset
1946 subPropertyOf=None, domain=None, range=None, inverseOf=None,
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shellac
parents:
diff changeset
1947 otherType=None, equivalentProperty=None,
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shellac
parents:
diff changeset
1948 comment=None,
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parents:
diff changeset
1949 verbAnnotations=None,
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shellac
parents:
diff changeset
1950 nameAnnotation=None,
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shellac
parents:
diff changeset
1951 nameIsLabel=False):
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shellac
parents:
diff changeset
1952 super(Property, self).__init__(identifier, graph,
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shellac
parents:
diff changeset
1953 nameAnnotation, nameIsLabel)
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shellac
parents:
diff changeset
1954 if verbAnnotations:
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shellac
parents:
diff changeset
1955 self.setupVerbAnnotations(verbAnnotations)
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shellac
parents:
diff changeset
1956
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shellac
parents:
diff changeset
1957 assert not isinstance(self.identifier, BNode)
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shellac
parents:
diff changeset
1958 if baseType is None:
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shellac
parents:
diff changeset
1959 # None give, determine via introspection
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shellac
parents:
diff changeset
1960 self._baseType = first(
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shellac
parents:
diff changeset
1961 Individual(self.identifier, graph=self.graph).type)
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shellac
parents:
diff changeset
1962 else:
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shellac
parents:
diff changeset
1963 if (self.identifier, RDF.type, baseType) not in self.graph:
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shellac
parents:
diff changeset
1964 self.graph.add((self.identifier, RDF.type, baseType))
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shellac
parents:
diff changeset
1965 self._baseType = baseType
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shellac
parents:
diff changeset
1966 self.subPropertyOf = subPropertyOf
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shellac
parents:
diff changeset
1967 self.inverseOf = inverseOf
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shellac
parents:
diff changeset
1968 self.domain = domain
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shellac
parents:
diff changeset
1969 self.range = range
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shellac
parents:
diff changeset
1970 self.comment = comment and comment or []
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shellac
parents:
diff changeset
1971
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shellac
parents:
diff changeset
1972 def serialize(self, graph):
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shellac
parents:
diff changeset
1973 for fact in self.graph.triples((self.identifier, None, None)):
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shellac
parents:
diff changeset
1974 graph.add(fact)
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shellac
parents:
diff changeset
1975 for p in itertools.chain(self.subPropertyOf,
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shellac
parents:
diff changeset
1976 self.inverseOf):
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shellac
parents:
diff changeset
1977 p.serialize(graph)
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shellac
parents:
diff changeset
1978 for c in itertools.chain(self.domain,
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shellac
parents:
diff changeset
1979 self.range):
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shellac
parents:
diff changeset
1980 CastClass(c, self.graph).serialize(graph)
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shellac
parents:
diff changeset
1981
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shellac
parents:
diff changeset
1982 def _get_extent(self, graph=None):
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shellac
parents:
diff changeset
1983 for triple in (graph is None and self.graph or graph).triples(
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shellac
parents:
diff changeset
1984 (None, self.identifier, None)):
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shellac
parents:
diff changeset
1985 yield triple
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shellac
parents:
diff changeset
1986
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shellac
parents:
diff changeset
1987 def _set_extent(self, other):
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shellac
parents:
diff changeset
1988 if not other:
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shellac
parents:
diff changeset
1989 return
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shellac
parents:
diff changeset
1990 for subj, obj in other:
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shellac
parents:
diff changeset
1991 self.graph.add((subj, self.identifier, obj))
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shellac
parents:
diff changeset
1992
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parents:
diff changeset
1993 extent = property(_get_extent, _set_extent)
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shellac
parents:
diff changeset
1994
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parents:
diff changeset
1995 def __repr__(self):
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parents:
diff changeset
1996 rt = []
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shellac
parents:
diff changeset
1997 if OWL_NS.ObjectProperty in self.type:
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shellac
parents:
diff changeset
1998 rt.append('ObjectProperty( %s annotation(%s)'
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shellac
parents:
diff changeset
1999 % (self.qname, first(self.comment) and
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2000 first(self.comment) or ''))
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shellac
parents:
diff changeset
2001 if first(self.inverseOf):
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shellac
parents:
diff changeset
2002 twoLinkInverse = first(first(self.inverseOf).inverseOf)
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shellac
parents:
diff changeset
2003 if twoLinkInverse \
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shellac
parents:
diff changeset
2004 and twoLinkInverse.identifier == self.identifier:
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shellac
parents:
diff changeset
2005 inverseRepr = first(self.inverseOf).qname
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shellac
parents:
diff changeset
2006 else:
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shellac
parents:
diff changeset
2007 inverseRepr = repr(first(self.inverseOf))
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shellac
parents:
diff changeset
2008 rt.append(" inverseOf( %s )%s" % (
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shellac
parents:
diff changeset
2009 inverseRepr,
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shellac
parents:
diff changeset
2010 OWL_NS.SymmetricProperty in self.type and
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shellac
parents:
diff changeset
2011 ' Symmetric' or
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shellac
parents:
diff changeset
2012 ''))
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shellac
parents:
diff changeset
2013 for s, p, roleType in self.graph.triples_choices(
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shellac
parents:
diff changeset
2014 (self.identifier,
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shellac
parents:
diff changeset
2015 RDF.type,
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shellac
parents:
diff changeset
2016 [OWL_NS.FunctionalProperty,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2017 OWL_NS.InverseFunctionalProperty,
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shellac
parents:
diff changeset
2018 OWL_NS.TransitiveProperty])):
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shellac
parents:
diff changeset
2019 rt.append(str(roleType.split(OWL_NS)[-1]))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2020 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2021 rt.append('DatatypeProperty( %s %s'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2022 % (self.qname, first(self.comment) and
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2023 first(self.comment) or
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2024 ''))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2025 for s, p, roleType in self.graph.triples((
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2026 self.identifier, RDF.type, OWL_NS.FunctionalProperty)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2027 rt.append(' Functional')
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2028
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2029 def canonicalName(term, g):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2030 normalizedName = classOrIdentifier(term)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2031 if isinstance(normalizedName, BNode):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2032 return term
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2033 elif normalizedName.startswith(_XSD_NS):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2034 return str(term)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2035 elif first(g.triples_choices((
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2036 normalizedName,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2037 [OWL_NS.unionOf,
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2038 OWL_NS.intersectionOf], None))):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2039 return repr(term)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2040 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2041 return str(term.qname)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2042 rt.append(' '.join([" super( %s )" % canonicalName(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2043 superP, self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2044 for superP in self.subPropertyOf]))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2045 rt.append(' '.join([" domain( %s )" % canonicalName(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2046 domain, self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2047 for domain in self.domain]))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2048 rt.append(' '.join([" range( %s )" % canonicalName(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2049 range, self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2050 for range in self.range]))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2051 rt = '\n'.join([expr for expr in rt if expr])
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2052 rt += '\n)'
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2053 return str(rt).encode('utf-8')
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2054
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2055 def _get_subPropertyOf(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2056 for anc in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2057 subject=self.identifier, predicate=RDFS.subPropertyOf):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2058 yield Property(anc, graph=self.graph, baseType=None)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2059
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2060 def _set_subPropertyOf(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2061 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2062 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2063 for sP in other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2064 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2065 (self.identifier, RDFS.subPropertyOf, classOrIdentifier(sP)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2066
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2067 @TermDeletionHelper(RDFS.subPropertyOf)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2068 def _del_subPropertyOf(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2069 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2070
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2071 subPropertyOf = property(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2072 _get_subPropertyOf, _set_subPropertyOf, _del_subPropertyOf)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2073
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2074 def _get_inverseOf(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2075 for anc in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2076 subject=self.identifier, predicate=OWL_NS.inverseOf):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2077 yield Property(anc, graph=self.graph, baseType=None)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2078
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2079 def _set_inverseOf(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2080 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2081 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2082 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2083 (self.identifier, OWL_NS.inverseOf, classOrIdentifier(other)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2084
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2085 @TermDeletionHelper(OWL_NS.inverseOf)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2086 def _del_inverseOf(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2087 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2088
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2089 inverseOf = property(_get_inverseOf, _set_inverseOf, _del_inverseOf)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2090
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2091 def _get_domain(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2092 for dom in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2093 subject=self.identifier, predicate=RDFS.domain):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2094 yield Class(dom, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2095
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2096 def _set_domain(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2097 if not other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2098 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2099 if isinstance(other, (Individual, Identifier)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2100 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2101 (self.identifier, RDFS.domain, classOrIdentifier(other)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2102 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2103 for dom in other:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2104 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2105 (self.identifier, RDFS.domain, classOrIdentifier(dom)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2106
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2107 @TermDeletionHelper(RDFS.domain)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2108 def _del_domain(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2109 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2110
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2111 domain = property(_get_domain, _set_domain, _del_domain)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2112
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2113 def _get_range(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2114 for ran in self.graph.objects(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2115 subject=self.identifier, predicate=RDFS.range):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2116 yield Class(ran, graph=self.graph)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2117
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2118 def _set_range(self, ranges):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2119 if not ranges:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2120 return
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2121 if isinstance(ranges, (Individual, Identifier)):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2122 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2123 (self.identifier, RDFS.range, classOrIdentifier(ranges)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2124 else:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2125 for range in ranges:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2126 self.graph.add(
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2127 (self.identifier, RDFS.range, classOrIdentifier(range)))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2128
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2129 @TermDeletionHelper(RDFS.range)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2130 def _del_range(self):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2131 pass
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2132
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2133 range = property(_get_range, _set_range, _del_range)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2134
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2135 def replace(self, other):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2136 # extension = []
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2137 for s, p, o in self.extent:
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2138 self.graph.add((s, propertyOrIdentifier(other), o))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2139 self.graph.remove((None, self.identifier, None))
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2140
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2141
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2142 def CommonNSBindings(graph, additionalNS={}):
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2143 """
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2144 Takes a graph and binds the common namespaces (rdf,rdfs, & owl)
4f3585e2f14b "planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
shellac
parents:
diff changeset
2145 """
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2146 namespace_manager = NamespaceManager(graph)
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2147 namespace_manager.bind('rdfs', RDFS)
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2148 namespace_manager.bind('rdf', RDF)
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2149 namespace_manager.bind('owl', OWL_NS)
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2150 for prefix, uri in list(additionalNS.items()):
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2151 namespace_manager.bind(prefix, uri, override=False)
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2152 graph.namespace_manager = namespace_manager
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2153
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2154
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2155 def test():
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2156 import doctest
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2157 doctest.testmod()
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2158
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2159
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2160 if __name__ == '__main__':
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2161 test()