Mercurial > repos > shellac > sam_consensus_v3
annotate env/bin/activate @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
| author | shellac | 
|---|---|
| date | Mon, 22 Mar 2021 18:12:50 +0000 | 
| parents | |
| children | 
| rev | line source | 
|---|---|
| 
0
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
1 # This file must be used with "source bin/activate" *from bash* | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
2 # you cannot run it directly | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
3 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
4 deactivate () { | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
5 # reset old environment variables | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
6 if [ -n "${_OLD_VIRTUAL_PATH:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
7 PATH="${_OLD_VIRTUAL_PATH:-}" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
8 export PATH | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
9 unset _OLD_VIRTUAL_PATH | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
10 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
11 if [ -n "${_OLD_VIRTUAL_PYTHONHOME:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
12 PYTHONHOME="${_OLD_VIRTUAL_PYTHONHOME:-}" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
13 export PYTHONHOME | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
14 unset _OLD_VIRTUAL_PYTHONHOME | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
15 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
16 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
17 # This should detect bash and zsh, which have a hash command that must | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
18 # be called to get it to forget past commands. Without forgetting | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
19 # past commands the $PATH changes we made may not be respected | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
20 if [ -n "${BASH:-}" -o -n "${ZSH_VERSION:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
21 hash -r 2> /dev/null | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
22 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
23 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
24 if [ -n "${_OLD_VIRTUAL_PS1:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
25 PS1="${_OLD_VIRTUAL_PS1:-}" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
26 export PS1 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
27 unset _OLD_VIRTUAL_PS1 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
28 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
29 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
30 unset VIRTUAL_ENV | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
31 if [ ! "${1:-}" = "nondestructive" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
32 # Self destruct! | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
33 unset -f deactivate | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
34 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
35 } | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
36 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
37 # unset irrelevant variables | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
38 deactivate nondestructive | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
39 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
40 VIRTUAL_ENV="/Users/cmdms/OneDrive-UOB/Development/Projects/2021/sam-consensus-v3/env" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
41 export VIRTUAL_ENV | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
42 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
43 _OLD_VIRTUAL_PATH="$PATH" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
44 PATH="$VIRTUAL_ENV/bin:$PATH" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
45 export PATH | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
46 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
47 # unset PYTHONHOME if set | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
48 # this will fail if PYTHONHOME is set to the empty string (which is bad anyway) | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
49 # could use `if (set -u; : $PYTHONHOME) ;` in bash | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
50 if [ -n "${PYTHONHOME:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
51 _OLD_VIRTUAL_PYTHONHOME="${PYTHONHOME:-}" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
52 unset PYTHONHOME | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
53 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
54 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
55 if [ -z "${VIRTUAL_ENV_DISABLE_PROMPT:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
56 _OLD_VIRTUAL_PS1="${PS1:-}" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
57 PS1="(env) ${PS1:-}" | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
58 export PS1 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
59 fi | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
60 | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
61 # This should detect bash and zsh, which have a hash command that must | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
62 # be called to get it to forget past commands. Without forgetting | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
63 # past commands the $PATH changes we made may not be respected | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
64 if [ -n "${BASH:-}" -o -n "${ZSH_VERSION:-}" ] ; then | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
65 hash -r 2> /dev/null | 
| 
 
4f3585e2f14b
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
 
shellac 
parents:  
diff
changeset
 | 
66 fi | 
