Mercurial > repos > shellac > sam_consensus_v3

comparison env/lib/python3.9/site-packages/boto/services/submit.py @ 0:4f3585e2f14b draft default tip

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"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author shellac
date Mon, 22 Mar 2021 18:12:50 +0000
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-1:000000000000 0:4f3585e2f14b
1 # Copyright (c) 2006,2007 Mitch Garnaat http://garnaat.org/
2 #
3 # Permission is hereby granted, free of charge, to any person obtaining a
4 # copy of this software and associated documentation files (the
5 # "Software"), to deal in the Software without restriction, including
6 # without limitation the rights to use, copy, modify, merge, publish, dis-
7 # tribute, sublicense, and/or sell copies of the Software, and to permit
8 # persons to whom the Software is furnished to do so, subject to the fol-
9 # lowing conditions:
10 #
11 # The above copyright notice and this permission notice shall be included
12 # in all copies or substantial portions of the Software.
13 #
14 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
15 # OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABIL-
16 # ITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT
17 # SHALL THE AUTHOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
18 # WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
19 # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS
20 # IN THE SOFTWARE.
21 import time
22 import os
23
24
25 class Submitter(object):
26
27 def __init__(self, sd):
28 self.sd = sd
29 self.input_bucket = self.sd.get_obj('input_bucket')
30 self.output_bucket = self.sd.get_obj('output_bucket')
31 self.output_domain = self.sd.get_obj('output_domain')
32 self.queue = self.sd.get_obj('input_queue')
33
34 def get_key_name(self, fullpath, prefix):
35 key_name = fullpath[len(prefix):]
36 l = key_name.split(os.sep)
37 return '/'.join(l)
38
39 def write_message(self, key, metadata):
40 if self.queue:
41 m = self.queue.new_message()
42 m.for_key(key, metadata)
43 if self.output_bucket:
44 m['OutputBucket'] = self.output_bucket.name
45 self.queue.write(m)
46
47 def submit_file(self, path, metadata=None, cb=None, num_cb=0, prefix='/'):
48 if not metadata:
49 metadata = {}
50 key_name = self.get_key_name(path, prefix)
51 k = self.input_bucket.new_key(key_name)
52 k.update_metadata(metadata)
53 k.set_contents_from_filename(path, replace=False, cb=cb, num_cb=num_cb)
54 self.write_message(k, metadata)
55
56 def submit_path(self, path, tags=None, ignore_dirs=None, cb=None, num_cb=0, status=False, prefix='/'):
57 path = os.path.expanduser(path)
58 path = os.path.expandvars(path)
59 path = os.path.abspath(path)
60 total = 0
61 metadata = {}
62 if tags:
63 metadata['Tags'] = tags
64 l = []
65 for t in time.gmtime():
66 l.append(str(t))
67 metadata['Batch'] = '_'.join(l)
68 if self.output_domain:
69 self.output_domain.put_attributes(metadata['Batch'], {'type' : 'Batch'})
70 if os.path.isdir(path):
71 for root, dirs, files in os.walk(path):
72 if ignore_dirs:
73 for ignore in ignore_dirs:
74 if ignore in dirs:
75 dirs.remove(ignore)
76 for file in files:
77 fullpath = os.path.join(root, file)
78 if status:
79 print('Submitting %s' % fullpath)
80 self.submit_file(fullpath, metadata, cb, num_cb, prefix)
81 total += 1
82 elif os.path.isfile(path):
83 self.submit_file(path, metadata, cb, num_cb)
84 total += 1
85 else:
86 print('problem with %s' % path)
87 return (metadata['Batch'], total)