Mercurial > repos > shellac > sam_consensus_v3
diff env/lib/python3.9/site-packages/planemo/engine/cwltool.py @ 0:4f3585e2f14b draft default tip
"planemo upload commit 60cee0fc7c0cda8592644e1aad72851dec82c959"
author | shellac |
---|---|
date | Mon, 22 Mar 2021 18:12:50 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/env/lib/python3.9/site-packages/planemo/engine/cwltool.py Mon Mar 22 18:12:50 2021 +0000 @@ -0,0 +1,24 @@ +"""Module contianing the :class:`CwlToolEngine` implementation of :class:`Engine`.""" + +from planemo import cwl +from planemo.runnable import RunnableType +from .interface import BaseEngine + + +class CwlToolEngine(BaseEngine): + """An :class:`Engine` implementation backed by cwltool. + + More information on cwltool can be found at https://github.com/common-workflow-language/cwltool. + """ + + handled_runnable_types = [RunnableType.cwl_tool, RunnableType.cwl_workflow] + + def _run(self, runnable, job_path): + """Run CWL job using cwltool.""" + path = runnable.path + return cwl.run_cwltool(self._ctx, path, job_path, **self._kwds) + + +__all__ = ( + "CwlToolEngine", +)