Mercurial > repos > shians > shrnaseq
comparison hairpinTool.xml @ 14:44130e484a97
- Fixed xml file so tool actually functions
author | shian_su <registertonysu@gmail.com> |
---|---|
date | Wed, 19 Nov 2014 11:05:03 +1100 |
parents | 7aaa9bc23e3c |
children | 5a917ea5bed2 |
comparison
equal
deleted
inserted
replaced
13:7aaa9bc23e3c | 14:44130e484a97 |
---|---|
1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.2.0"> | 1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.2.1"> |
2 <description> | 2 <description> |
3 Analyse differential representation for shRNAseq and sgRNA based procedures | 3 Analyse differential representation for shRNAseq and sgRNA based procedures |
4 using edgeR package from Bioconductor. | 4 using edgeR package from Bioconductor. |
5 </description> | 5 </description> |
6 | 6 |
13 <stdio> | 13 <stdio> |
14 <exit_code range="1:" level="fatal" description="Tool exception" /> | 14 <exit_code range="1:" level="fatal" description="Tool exception" /> |
15 </stdio> | 15 </stdio> |
16 | 16 |
17 <command interpreter="Rscript"> | 17 <command interpreter="Rscript"> |
18 ampliconTool.R $inputOpt.inputType | 18 hairpinTool.R $inputOpt.inputType |
19 #if $inputOpt.inputType=="fastq": | 19 #if $inputOpt.inputType=="fastq": |
20 | 20 |
21 #for $i, $fas in enumerate($inputOpt.fastq): | 21 #for $i, $fas in enumerate($inputOpt.fastq): |
22 fastq::$fas.file | 22 fastq::$fas.file |
23 #end for | 23 #end for |