Mercurial > repos > shians > shrnaseq

comparison hairpinTool.xml @ 8:548802b3492f

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Version 1.0.9 - Added R session info to output - Added email for bug reports - Changed edgeR requirement to be stopping condition - Changed names of gene-wise comparison tables to "gene_level" from "roast" - Fixed selection of multiple genes for barcode plotting
author shian_su <registertonysu@gmail.com>
date Fri, 02 May 2014 17:22:24 +1000
parents 91e411fcdecc
children f1076bfb0ed1
comparison
equal deleted inserted replaced
7:91e411fcdecc 8:548802b3492f
1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.0.8"> 1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.0.9">
2 <description> 2 <description>
3 Analyse hairpin differential representation using edgeR 3 Analyse hairpin differential representation using edgeR
4 </description> 4 </description>
5 5
6 <requirements> 6 <requirements>
403 Biostatistics, 9, 321-332 403 Biostatistics, 9, 321-332
404 404
405 * McCarthy DJ, Chen Y and Smyth GK (2012). Differential expression analysis 405 * McCarthy DJ, Chen Y and Smyth GK (2012). Differential expression analysis
406 of multifactor RNA-Seq experiments with respect to biological variation. 406 of multifactor RNA-Seq experiments with respect to biological variation.
407 Nucleic Acids Research 40, 4288-4297 407 Nucleic Acids Research 40, 4288-4297
408
409 Report problems to: su.s@wehi.edu.au
408 410
409 .. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html 411 .. _edgeR: http://www.bioconductor.org/packages/release/bioc/html/edgeR.html
410 .. _limma: http://www.bioconductor.org/packages/release/bioc/html/limma.html 412 .. _limma: http://www.bioconductor.org/packages/release/bioc/html/limma.html
411 </help> 413 </help>
412 </tool> 414 </tool>