Mercurial > repos > shians > shrnaseq

comparison hairpinTool.xml @ 15:5a917ea5bed2

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- Fixed read requirement report statistic.
author shian_su <registertonysu@gmail.com>
date Mon, 12 Jan 2015 16:31:48 +1100
parents 44130e484a97
children 438f2733bc27
comparison
equal deleted inserted replaced
14:44130e484a97 15:5a917ea5bed2
79 0 79 0
80 0 80 0
81 #end if 81 #end if
82 82
83 #if $inputOpt.secondaryFactor.secFactorOpt=="yes": 83 #if $inputOpt.secondaryFactor.secFactorOpt=="yes":
84 $inputOpt.secondaryFactor.secFactName 84 "$inputOpt.secondaryFactor.secFactName"
85 #else: 85 #else:
86 "none" 86 "none"
87 #end if 87 #end if
88 88
89 #if $filterCPM.filtOption=="yes": 89 #if $filterCPM.filtOption=="yes":
94 -Inf 94 -Inf
95 -Inf 95 -Inf
96 -Inf 96 -Inf
97 #end if 97 #end if
98 98
99 $fdr 99 "$fdr"
100 $lfc 100 "$lfc"
101 $direction 101 "$direction"
102 $workMode.mode 102 "$workMode.mode"
103 $outFile 103 "$outFile"
104 $outFile.files_path 104 "$outFile.files_path"
105 105
106 #if $workMode.mode=="classic": 106 #if $workMode.mode=="classic":
107 "$workMode.pair1" 107 "$workMode.pair1"
108 "$workMode.pair2" 108 "$workMode.pair2"
109 #elif $workMode.mode=="glm": 109 #elif $workMode.mode=="glm":
110 "$workMode.contrast" 110 "$workMode.contrast"
111 $workMode.roast.roastOption 111 "$workMode.roast.roastOption"
112 112
113 #if $workMode.roast.roastOption=="yes": 113 #if $workMode.roast.roastOption=="yes":
114 $workMode.roast.hairpinReq 114 "$workMode.roast.hairpinReq"
115 $workMode.roast.select.selOption 115 "$workMode.roast.select.selOption"
116 "$workMode.roast.select.selection" 116 "$workMode.roast.select.selection"
117 #else: 117 #else:
118 0 118 0
119 0 119 0
120 0 120 0