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comparison hairpinTool.xml @ 11:c0a76e30d61b

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- Removed max on cpm filtering. Really shouldn't have been there in the first place. - Added explicit arguments to processHairpinReads in R.
author shian_su <registertonysu@gmail.com>
date Tue, 30 Sep 2014 16:36:12 +1000
parents 8923d4ea858b
children 7aaa9bc23e3c
comparison
equal deleted inserted replaced
10:8923d4ea858b 11:c0a76e30d61b
1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.0.12"> 1 <tool id="shRNAseq" name="shRNAseq Tool" version="1.0.13">
2 <description> 2 <description>
3 Analyse hairpin differential representation using edgeR 3 Analyse hairpin differential representation using edgeR
4 </description> 4 </description>
5 5
6 <requirements> 6 <requirements>
133 <option value="yes">Yes</option> 133 <option value="yes">Yes</option>
134 <option value="no">No</option> 134 <option value="no">No</option>
135 </param> 135 </param>
136 136
137 <when value="yes"> 137 <when value="yes">
138 <param name="cpmReq" type="float" value="0.5" min="0" max="1" 138 <param name="cpmReq" type="float" value="0.5" min="0"
139 label="Minimum CPM"/> 139 label="Minimum CPM"/>
140 140
141 <param name="sampleReq" type="integer" value="1" min="0" 141 <param name="sampleReq" type="integer" value="1" min="0"
142 label="Minimum Samples" 142 label="Minimum Samples"
143 help="Filter out all the genes that do not meet the minimum 143 help="Filter out all the genes that do not meet the minimum