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comparison hairpinTool.R @ 12:ebb4cb1e8e35

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- Fixed BCV plot pdf not showing in the html output
author shian_su <registertonysu@gmail.com>
date Wed, 01 Oct 2014 16:00:43 +1000
parents c0a76e30d61b
children 7aaa9bc23e3c
comparison
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11:c0a76e30d61b 12:ebb4cb1e8e35
489 invisible(dev.off()) 489 invisible(dev.off())
490 490
491 pdf(bcvPdf) 491 pdf(bcvPdf)
492 plotBCV(data, main="BCV Plot") 492 plotBCV(data, main="BCV Plot")
493 newEntry <- c("BCV Plot (.pdf)", "bcv.pdf") 493 newEntry <- c("BCV Plot (.pdf)", "bcv.pdf")
494 linkData <- rbind(linkData, newEntry)
494 invisible(dev.off()) 495 invisible(dev.off())
495 496
496 if (workMode=="classic") { 497 if (workMode=="classic") {
497 # Assess differential representation using classic exact testing methodology 498 # Assess differential representation using classic exact testing methodology
498 # in edgeR 499 # in edgeR