Mercurial > repos > sigven > metascreen_pre_experimental

comparison metascreen.xml @ 4:22251a4b8f8f draft

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author sigven
date Fri, 11 Nov 2022 14:49:08 +0000
parents 2315c8ea7d2f
children e9fcb14b0065
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3:2315c8ea7d2f 4:22251a4b8f8f
1 <tool id="metascreenPre" name="mscreen: pre-experimental" version="0.2.1"> 1 <tool id="metascreenPre" name="mscreen: pre-experimental" version="0.2.2">
2 <description>Pre-experimental setup of drug combination screens</description> 2 <description>Pre-experimental setup of drug combination screens</description>
3 <requirements> 3 <requirements>
4 <container type="docker">sigven/metascreen:0.2.0</container> 4 <container type="docker">sigven/metascreen:0.2.0</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"><![CDATA[ 6 <command detect_errors="aggressive"><![CDATA[
77 sourcePlate = dplyr::bind_rows( 77 sourcePlate = dplyr::bind_rows(
78 sourcePlate, 78 sourcePlate,
79 metascreen::importPlateMap( 79 metascreen::importPlateMap(
80 "$pmap.element_identifier", 80 "$pmap.element_identifier",
81 .fileFormat = "PlateMap", 81 .fileFormat = "PlateMap",
82 galaxy = TRUE,
83 .sourcePlateConv = $input_data.convert_platemap_format 82 .sourcePlateConv = $input_data.convert_platemap_format
84 ) 83 )
85 ); 84 );
86 #end for 85 #end for
87 86