Mercurial > repos > sigven > oncoenrichr

changeset 4:781e1a7160d8 draft

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Uploaded
author sigven
date Sun, 18 Jun 2023 07:28:09 +0000
parents 2f22b3924572
children 162b7482ae84
files oncoenrichr_wrapper.xml
diffstat 1 files changed, 10 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/oncoenrichr_wrapper.xml	Tue Feb 21 14:47:45 2023 +0000
+++ b/oncoenrichr_wrapper.xml	Sun Jun 18 07:28:09 2023 +0000
@@ -123,7 +123,7 @@
       #end if
 
       regulatory_min_confidence = "$regulatory.regulatory_min_confidence",
-      
+
       html_floating_toc = $report_metadata.html_floating_toc,
       html_report_theme = "$report_metadata.html_report_theme",
       galaxy = TRUE
@@ -335,8 +335,14 @@
 
 -  `NetPath <http://www.netpath.org/>`_ - manually curated resource of signal transduction pathways in humans
 
+-  `UniProt <https://uniprot.org>`_ - Comprehensive resource of protein sequence and functional information
+
 -  `STRING <https://string-db.org/>`_ - protein-protein interaction database
 
+-  `InterPro/PFAM <https://www.ebi.ac.uk/interpro/>`_ - Collection of protein families/domains`
+
+-  `BIOGRID <http://thebiogrid.org>`_ - Database of Protein, Genetic and Chemical Interactions
+
 -  `CellChatDB <http://www.cellchat.org/>`_ - database on ligand-receptor interactions
 
 -  `DoRothEA <https://saezlab.github.io/dorothea/>`_ - gene set resource containing signed transcription factor (TF) - target interactions
@@ -353,9 +359,11 @@
 
 -  `CancerMine <http://bionlp.bcgsc.ca/cancermine/>`_ - literature-mined resource on cancer drivers, oncogenes and tumor suppressor genes
 
+-  `Cancer Gene Census <https://cancer.sanger.ac.uk/census/>`_ - Curated high-confidence list of genes with substantial published evidence in oncology
+
 -  `Network of Cancer Genes <http://ncg.kcl.ac.uk/>`_ - manually curated collection of cancer genes, healthy drivers and their properties
 
--  `Project Score <https://score.depmap.sanger.ac.uk/>`_ - database on the effects on cancer cell line viability elicited by CRISPR-Cas9 mediated gene activation
+-  `DepMap/Project Score <https://score.depmap.sanger.ac.uk/>`_ - database on the effects on cancer cell line viability elicited by CRISPR-Cas9 mediated gene activation
 
 -  `Genetic determinants of survival in cancer <http://survival.cshl.edu/>`_ - resource on the prognostic impact of genetic aberrations (methylation, CNA, mutation, expression) in human cancers (TCGA)