Mercurial > repos > simon-gladman > fasta_extract
comparison fa-extract-sequence.xml @ 1:5dfc014a8b3a draft default tip
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| author | simon-gladman |
|---|---|
| date | Tue, 25 Jun 2013 01:48:56 -0400 |
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| 0:bcb73a63ffee | 1:5dfc014a8b3a |
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| 1 <tool id="fa-extract-sequence" name="Fasta Extract Sequence" version="1.0.0"> | |
| 2 <description>Extract a single sequence from a fasta file.</description> | |
| 3 <command interpreter="perl"> | |
| 4 fa-extract-few.pl | |
| 5 -f $dataset | |
| 6 $id | |
| 7 > | |
| 8 $output | |
| 9 </command> | |
| 10 <inputs> | |
| 11 <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/> | |
| 12 <param name="id" type="text" label="Sequence ID (or partial)" help="Name of the sequence to extract. Will also match partial names and return all matches." /> | |
| 13 </inputs> | |
| 14 <outputs> | |
| 15 <data name="output" format="fasta" label="${tool.name} on ${on_string}: Fasta"/> | |
| 16 </outputs> | |
| 17 | |
| 18 <help> | |
| 19 **Fasta Extract Sequence** | |
| 20 Extracts a fasta sequence from a multfasta by id (exact or partial) | |
| 21 | |
| 22 Written by Torsten Seemann - Victorian Bioinformatics Consortium | |
| 23 | |
| 24 Wrapped by Simon Gladman - Victorian Bioinformatics Consortium | |
| 25 | |
| 26 ------ | |
| 27 | |
| 28 Outputs in fasta format. | |
| 29 | |
| 30 ------ | |
| 31 | |
| 32 Inputs: | |
| 33 | |
| 34 Fasta dataset | |
| 35 | |
| 36 Sequence id | |
| 37 </help> | |
| 38 </tool> |