<tool id="fa-extract-sequence" name="Fasta Extract Sequence" version="1.0.0">
    <description>Extract a single sequence from a fasta file.</description>
    <command interpreter="perl">
        fa-extract-few.pl
        -f $dataset
        $id
        > 
        $output
    </command>
    <inputs>
        <param name="dataset" type="data" format="fasta" label="fasta or multifasta file" help="fasta dataset to get statistics for."/>
        <param name="id" type="text" label="Sequence ID (or partial)" help="Name of the sequence to extract. Will also match partial names and return all matches." />
    </inputs>
    <outputs>
        <data name="output" format="fasta" label="${tool.name} on ${on_string}: Fasta"/>
    </outputs>
    
    <help>
**Fasta Extract Sequence**
Extracts a fasta sequence from a multfasta by id (exact or partial)

Written by Torsten Seemann - Victorian Bioinformatics Consortium

Wrapped by Simon Gladman - Victorian Bioinformatics Consortium

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Outputs in fasta format.
    
------

Inputs:

Fasta dataset

Sequence id
    </help>
</tool>