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1 # -*- Autoconf -*-
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2 # Process this file with autoconf to produce a configure script.
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3
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4 AC_PREREQ(2.61)
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5 AC_INIT([bwa], [0.5.5])
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6 AC_CONFIG_SRCDIR([bntseq.c])
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7 AC_CONFIG_HEADER([config.h])
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8 AC_CONFIG_MACRO_DIR([m4])
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9 AM_INIT_AUTOMAKE()
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10
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11 # Checks for programs.
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12 AC_PROG_CC([gcc])
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13 AC_PROG_CXX([g++])
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14 AC_PROG_INSTALL
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15 AC_PROG_AWK
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16 AC_PROG_MKDIR_P
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17 AC_PROG_RANLIB
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18
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19 # Checks for libraries.
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20
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21 # Checks for header files.
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22 AC_HEADER_STDC
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23 AC_CHECK_HEADERS([limits.h stdint.h stdlib.h string.h unistd.h])
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24
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25 # Checks for typedefs, structures, and compiler characteristics.
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26 AC_C_CONST
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27 AC_C_INLINE
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28 AC_TYPE_INT32_T
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29 AC_TYPE_INT64_T
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30 AC_TYPE_SIZE_T
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31 AC_TYPE_UINT16_T
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32 AC_TYPE_UINT32_T
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33 AC_TYPE_UINT64_T
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34 AC_TYPE_UINT8_T
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35
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36 # Checks for library functions.
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37 AC_FUNC_MALLOC
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38 AC_FUNC_REALLOC
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39 AC_FUNC_VPRINTF
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40 AC_CHECK_FUNCS([memmove memset sqrt strdup strstr])
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41 AC_CHECK_LIB([m],[log])
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42 AC_CHECK_LIB([z],[gzopen])
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43 AC_CHECK_LIB([pthread],[pthread_create])
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44
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45 ACX_PTHREAD
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46
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47 AC_CONFIG_FILES([Makefile
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48 bwt_gen/Makefile])
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49 AC_OUTPUT
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