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1 /* The MIT License
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2
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3 Copyright (c) 2003-2006, 2008, 2009 by Heng Li <lh3@live.co.uk>
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4
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5 Permission is hereby granted, free of charge, to any person obtaining
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6 a copy of this software and associated documentation files (the
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7 "Software"), to deal in the Software without restriction, including
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8 without limitation the rights to use, copy, modify, merge, publish,
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9 distribute, sublicense, and/or sell copies of the Software, and to
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10 permit persons to whom the Software is furnished to do so, subject to
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11 the following conditions:
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12
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13 The above copyright notice and this permission notice shall be
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14 included in all copies or substantial portions of the Software.
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15
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16 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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17 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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18 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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19 NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
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20 BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
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21 ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
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22 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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23 SOFTWARE.
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24 */
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25
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26 #ifndef LH3_KPROBALN_H_
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27 #define LH3_KPROBALN_H_
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28
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29 #include <stdint.h>
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30
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31 typedef struct {
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32 float d, e;
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33 int bw;
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34 } kpa_par_t;
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35
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36 #ifdef __cplusplus
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37 extern "C" {
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38 #endif
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39
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40 int kpa_glocal(const uint8_t *_ref, int l_ref, const uint8_t *_query, int l_query, const uint8_t *iqual,
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41 const kpa_par_t *c, int *state, uint8_t *q);
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42
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43 #ifdef __cplusplus
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44 }
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45 #endif
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46
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47 extern kpa_par_t kpa_par_def, kpa_par_alt;
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48
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49 #endif
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