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comparison pyPRADA_1.2/tools/bwa-0.5.7-mh/configure.in @ 0:acc2ca1a3ba4

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author siyuan
date Thu, 20 Feb 2014 00:44:58 -0500
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-1:000000000000 0:acc2ca1a3ba4
1 # -*- Autoconf -*-
2 # Process this file with autoconf to produce a configure script.
3
4 AC_PREREQ(2.61)
5 AC_INIT([bwa], [0.5.5])
6 AC_CONFIG_SRCDIR([bntseq.c])
7 AC_CONFIG_HEADER([config.h])
8 AC_CONFIG_MACRO_DIR([m4])
9 AM_INIT_AUTOMAKE()
10
11 # Checks for programs.
12 AC_PROG_CC([gcc])
13 AC_PROG_CXX([g++])
14 AC_PROG_INSTALL
15 AC_PROG_AWK
16 AC_PROG_MKDIR_P
17 AC_PROG_RANLIB
18
19 # Checks for libraries.
20
21 # Checks for header files.
22 AC_HEADER_STDC
23 AC_CHECK_HEADERS([limits.h stdint.h stdlib.h string.h unistd.h])
24
25 # Checks for typedefs, structures, and compiler characteristics.
26 AC_C_CONST
27 AC_C_INLINE
28 AC_TYPE_INT32_T
29 AC_TYPE_INT64_T
30 AC_TYPE_SIZE_T
31 AC_TYPE_UINT16_T
32 AC_TYPE_UINT32_T
33 AC_TYPE_UINT64_T
34 AC_TYPE_UINT8_T
35
36 # Checks for library functions.
37 AC_FUNC_MALLOC
38 AC_FUNC_REALLOC
39 AC_FUNC_VPRINTF
40 AC_CHECK_FUNCS([memmove memset sqrt strdup strstr])
41 AC_CHECK_LIB([m],[log])
42 AC_CHECK_LIB([z],[gzopen])
43 AC_CHECK_LIB([pthread],[pthread_create])
44
45 ACX_PTHREAD
46
47 AC_CONFIG_FILES([Makefile
48 bwt_gen/Makefile])
49 AC_OUTPUT