Mercurial > repos > siyuan > prada
comparison pyPRADA_1.2/tools/bwa-0.5.7-mh/utils.h @ 0:acc2ca1a3ba4
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author | siyuan |
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date | Thu, 20 Feb 2014 00:44:58 -0500 |
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1 /* The MIT License | |
2 | |
3 Copyright (c) 2008 Genome Research Ltd (GRL). | |
4 | |
5 Permission is hereby granted, free of charge, to any person obtaining | |
6 a copy of this software and associated documentation files (the | |
7 "Software"), to deal in the Software without restriction, including | |
8 without limitation the rights to use, copy, modify, merge, publish, | |
9 distribute, sublicense, and/or sell copies of the Software, and to | |
10 permit persons to whom the Software is furnished to do so, subject to | |
11 the following conditions: | |
12 | |
13 The above copyright notice and this permission notice shall be | |
14 included in all copies or substantial portions of the Software. | |
15 | |
16 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, | |
17 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF | |
18 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND | |
19 NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS | |
20 BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN | |
21 ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN | |
22 CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | |
23 SOFTWARE. | |
24 */ | |
25 | |
26 /* Contact: Heng Li <lh3@sanger.ac.uk> */ | |
27 | |
28 #ifndef LH3_UTILS_H | |
29 #define LH3_UTILS_H | |
30 | |
31 #include <stdio.h> | |
32 #include <zlib.h> | |
33 | |
34 #define err_fatal_simple(msg) err_fatal_simple_core(__func__, msg) | |
35 #define xopen(fn, mode) err_xopen_core(__func__, fn, mode) | |
36 #define xzopen(fn, mode) err_xzopen_core(__func__, fn, mode) | |
37 #define xassert(cond, msg) if ((cond) == 0) err_fatal_simple_core(__func__, msg) | |
38 | |
39 #ifdef __cplusplus | |
40 extern "C" { | |
41 #endif | |
42 | |
43 void err_fatal(const char *header, const char *fmt, ...); | |
44 void err_fatal_simple_core(const char *func, const char *msg); | |
45 FILE *err_xopen_core(const char *func, const char *fn, const char *mode); | |
46 gzFile err_xzopen_core(const char *func, const char *fn, const char *mode); | |
47 | |
48 #ifdef __cplusplus | |
49 } | |
50 #endif | |
51 | |
52 #endif |