Mercurial > repos > siyuan > prada
comparison pyPRADA_1.2/tools/samtools-0.1.16/AUTHORS @ 0:acc2ca1a3ba4
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| author | siyuan |
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| date | Thu, 20 Feb 2014 00:44:58 -0500 |
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| -1:000000000000 | 0:acc2ca1a3ba4 |
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| 1 Heng Li from the Sanger Institute wrote most of the initial source codes | |
| 2 of SAMtools and various converters. | |
| 3 | |
| 4 Bob Handsaker from the Broad Institute is a major contributor to the | |
| 5 SAM/BAM specification. He designed and implemented the BGZF format, the | |
| 6 underlying indexable compression format for the BAM format. BGZF does | |
| 7 not support arithmetic between file offsets. | |
| 8 | |
| 9 Jue Ruan for the Beijing Genome Institute designed and implemented the | |
| 10 RAZF format, an alternative indexable compression format. RAZF supports | |
| 11 arithmetic between file offsets, at the cost of increased index file | |
| 12 size and the full compatibility with gzip. RAZF is optional and only | |
| 13 used in `faidx' for indexing RAZF compressed fasta files. | |
| 14 | |
| 15 Colin Hercus updated novo2sam.pl to support gapped alignment by | |
| 16 novoalign. | |
| 17 | |
| 18 Petr Danecek contributed the header parsing library sam_header.c and | |
| 19 sam2vcf.pl script and added knet support to the RAZF library. | |
| 20 |